Scaffold Ga0209085_1002172

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1002172
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11299
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (65.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002935	Metagenome	519	Y
F020171	Metagenome / Metatranscriptome	225	Y
F066789	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100217215	F020171	GGAGG	MAEQFIDTIAEHITGAMIQEIAEDLYENWSNANCDEGPEYAERQFMAYASDELKQQYNEYYGYIEGDEFLL
Ga0209085_100217222	F002935	AGGA	MRDRIKGYKGNKLDGKKLAKIANDIYRLQYSNDFSECTVDNLLLIELEEKNVFGDPKYAVLCSEGVGWEQDSYGCLEIPTNIGQWGSWNGRVFISVDTVKSCQTIFQEDVSEYIRTFGDRLDSNCSLWQSKMSVAPATILA
Ga0209085_10021724	F066789	N/A	MTHNCTFDLDLDGQVTCTVCGAMDDDKEPNKIFEEQVDFE