NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1001349

Scaffold Ga0209085_1001349


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1001349 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15285
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (84.09%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025480Metagenome201Y
F027512Metagenome194Y
F066460Metagenome126N
F079614Metagenome115N
F088766Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100134910F088766AGGAMIMCRTKRLYYVALNKKKVFHDGGWSNYIATPYLGRARYYAKKLKLKNRQIDVRIWGKGKYVLQGSWL
Ga0209085_100134914F079614N/AMYNLITSTGKVLSFQIKSCAELYQKAYGGVVFTQQVLDNATSYDTMIPSNEKGTEYVYNP
Ga0209085_100134921F025480GAGMDRYKEKNCKFCDKLHKKRGVYCCQSCANRDRTEYSPKVAEAMRKVAIDYNRTPEAIAAQKLFGTGIASEDFAIDIPEIKDLSDYTEFLDGFDRGEKW
Ga0209085_100134925F027512AGTAGGMTVDEQIKEFLKMYGDRLPNPEHCPKEFEYYVKLYKYIKGLE
Ga0209085_10013499F066460AGGAMIVHVLLEENDEGKSSFCHGVYTSFEDAKKAKYAMIRDQYHIPEDEVADKDLDDEIYPSGVYYTIVPREVI

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