Scaffold Ga0209085_1001349

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1001349
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15285
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (84.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025480	Metagenome	201	Y
F027512	Metagenome	194	Y
F066460	Metagenome	126	N
F079614	Metagenome	115	N
F088766	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100134910	F088766	AGGA	MIMCRTKRLYYVALNKKKVFHDGGWSNYIATPYLGRARYYAKKLKLKNRQIDVRIWGKGKYVLQGSWL
Ga0209085_100134914	F079614	N/A	MYNLITSTGKVLSFQIKSCAELYQKAYGGVVFTQQVLDNATSYDTMIPSNEKGTEYVYNP
Ga0209085_100134921	F025480	GAG	MDRYKEKNCKFCDKLHKKRGVYCCQSCANRDRTEYSPKVAEAMRKVAIDYNRTPEAIAAQKLFGTGIASEDFAIDIPEIKDLSDYTEFLDGFDRGEKW
Ga0209085_100134925	F027512	AGTAGG	MTVDEQIKEFLKMYGDRLPNPEHCPKEFEYYVKLYKYIKGLE
Ga0209085_10013499	F066460	AGGA	MIVHVLLEENDEGKSSFCHGVYTSFEDAKKAKYAMIRDQYHIPEDEVADKDLDDEIYPSGVYYTIVPREVI