Scaffold Ga0209085

Basic Information
Taxon OID	3300027741 Open in IMG/M
Scaffold ID	Ga0209085_1000900 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027741 Open in IMG/M

Scaffold ID

Ga0209085_1000900 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19797
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (81.08%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

19797

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (81.08%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007747	Metagenome / Metatranscriptome	345	Y
F009066	Metagenome	323	Y
F020510	Metagenome / Metatranscriptome	223	Y
F026867	Metagenome	196	Y
F033352	Metagenome / Metatranscriptome	177	N
F043823	Metagenome	155	N
F048834	Metagenome	147	N
F081048	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100090014	F009066	GGAG	VSPEHEKHLAGILSDLVKDVDAKYRKGQEQHGGALWRRPVWKDAWEECLDLCTYLHTLRMQLSVIADLALLGASDESVAASSSRESCRQILAVLEGFPSAIDKK
Ga0209085_100090016	F048834	AGGAGG	VAIPSIKDWAVALDAYVAGDREEVVPPGWYTKIEIAKQWGKSDVYTNKILTRMIKAGGTERKVFSIKIKISQRGGKIGHCRRVPHYRLAAVKTGKT
Ga0209085_100090017	F043823	N/A	MKKAKTNLTIDPKVKRSGERLAKKGGLSLSAYITTLLVKELEKQKRR
Ga0209085_100090019	F026867	GAG	MSLGRLNDIAMKLRQQNQALSLRQLGAAYGLGYVRIKQMRELSGFPLIAGKVIPSDFDRWRLIQTGLNSQHRADRLRSAVGKARELKSTSGSQVSWRQIANSLKAEAWLHELREGNGSSD
Ga0209085_100090025	F033352	N/A	MTDLLKFRLIENIEVLACRNSAERVVKALNRGEVEQAKDLARKHEIAWHITDREFQDLNQPHRTNDFCDDE
Ga0209085_100090031	F020510	AGGCGG	VSLQDLLTMFSARVIGTYTPEQYANCVREARANRMRWGIGQW
Ga0209085_100090032	F081048	AGG	VSVKRLTWQIEILERAKKSLIDGRLIMARSRLDMALHIAKELLKRAQTYQKRDLEKKK
Ga0209085_100090034	F007747	AGGAG	MKDLGKITFGKARPAPKQVLVDVTYDAKTAKALHAFGLKELKKDPEAVVEYVIAKALKGFEKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209085_1000900

Overview

Ecosystem & Geography

Associated Families

Sequences