Scaffold Ga0209085_1000286

Overview

Basic Information

• Taxon OID: 3300027741
• Scaffold ID: Ga0209085_1000286
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37927
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (67.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008244	Metagenome / Metatranscriptome	336	Y
F037225	Metagenome	168	Y
F090402	Metagenome	108	Y
F092043	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100028615	F037225	N/A	MQILFKQAGGYIETDEEGNIFTYAHDFDPEQFARSLVMECYQTLINHGYTDAAHVLETEFAEEWQKYEFPEI
Ga0209085_100028622	F092043	GGAG	MIPWYKKLLLMIIAPFIIGAWCVMNPRKVWVQAKKDFGVKE
Ga0209085_10002864	F008244	AGGAG	MFNTATYAFIDGVSDFKKKIVEQTVQHDGIKTALNGFVDAQSKYTKQAADAGMQSMMSLGMIFMSKEYYTGLADQFKTLTPSFNATKAK
Ga0209085_100028657	F090402	AGCAGG	MIVNILVTVFFGYLLVTNDYTIRPKWIYYIDGTIFAINFATVVKYLTEMFGY