Scaffold Ga0209190_1128018

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1128018
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1130
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F011384	Metagenome / Metatranscriptome	291	Y
F068573	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_11280181	F002037	GGA	VVLAALAIWGTEQVMAQTTTILAPDGSVTVCQVGSNGIVICV
Ga0209190_11280184	F011384	GGAG	MYTKLDDQRQAKFIIDYINKHPNCSIKNIVQQCATNRTRLKYLESQGYFSLPKWTYNNELDKRFKNRTYVSVTVGREYGKWT
Ga0209190_11280185	F068573	AGTAG	MDSKPLTQEEIMKAYGKVFPTRYEPITLERMIQFARIIEQLHGVKDVH