NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1032087

Scaffold Ga0209190_1032087


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1032087 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2807
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039994Metagenome162N
F091592Metagenome107N
F102824Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_10320873F039994AGGAMENPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDRPVYDYHITRCIKHAVTAQQQIHLNHPNPDESGENAIDHLERAVVRALFSWMQLKKGLPRL
Ga0209190_10320877F102824N/AMTSVRVQREEGKWRVTTMAGNPIGPRLWGAVPPNGLPSIEDLFEDKGKAQDAADLWNAYALWCKERSGKRKRR
Ga0209190_10320878F091592GGAMISAQFTRGDENDRIKQLAGEVAIRAMQDIKLLQRRGVLDGLRLTKNQIGKLSDCNCYRDIKEVRSLVRDVKNGTVLFWCKVAGVRIDQATLNRVIKRGVGNVN

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