NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1010453

Scaffold Ga0209190_1010453


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1010453 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5556
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011142Metagenome / Metatranscriptome294Y
F035668Metagenome / Metatranscriptome171Y
F059759Metagenome / Metatranscriptome133Y
F059760Metagenome / Metatranscriptome133N
F102815Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_101045313F059760AGGMTETKDVITEAITRSRDNAIEAVISVVKSYKDLQLPAQPKEAYDLGARDTLDTLLIHLNKFAEGVKAGRSE
Ga0209190_101045314F035668AGGCGGVSCNNCQDNCACTRVNSVNIFSRDYKAGASEGQRAEATRTSDALIELERKQVITNAQLQAILDLILEKLTDQVDIL
Ga0209190_10104535F011142GAGMAQVKVTGKVNKVFGASSQGLSLVESYKSATGEDYTRTWTVWFAVAHNLAVDSEVTVTGQLSAKIEDFEDKTGKPGRKVKLDVNNAVIASTPKIEELPF
Ga0209190_10104538F059759AGCAGGMNKQQIWDLLEIYRQMQVANTLTQYGDAFQELHVFIEENCLKEGN
Ga0209190_10104539F102815AGGAMNTEELFLQAINAYKAWINTGKDFVNHANLYDVWDDAVMAYAQAVHLQRNRAVHQILQGLELIK
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