NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1009423

Scaffold Ga0209190_1009423


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1009423 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5904
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011142Metagenome / Metatranscriptome294Y
F035668Metagenome / Metatranscriptome171Y
F059759Metagenome / Metatranscriptome133Y
F059760Metagenome / Metatranscriptome133N
F068428Metagenome124Y
F102815Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100942313F059760GGAMTETKDVITEAITRSRDNAIEAVISVVTSYRDLQIDLNATAALDDLLIHLNRFAEGVKAGRSE
Ga0209190_100942314F035668GGAGMSCKNCQDNCACTRVNAVNIFSRDYKAGVSEGQRAEATRTSDALIELERKQVITNAQLEAILDLILEKLTDQVDIL
Ga0209190_100942318F068428GAGMFEDLTIPKRQTNCRVRTILSELSDKDRVIVESAVMNPEWPYKTLSTEMYKRGIKCSDAAIKHHR
Ga0209190_10094235F011142GAGMAQVKVTGKVNKVFGASNQGLSLVESYKSATGEDYTRTWTVWFAVAHNLAVDSEVTVTGQLSAKIEDFEDKTGKPGRKVKLDVDNAVVVSAPKTEELPF
Ga0209190_10094238F059759AGGMTKQQIWDLLEIYRQMQVANTLTQYGDAFEELHVFIEENCLKEGN
Ga0209190_10094239F102815AGGAMNTEELFLQAINAYKAWINTGKDFVNHADLYDVWDDAVLAYAQAVHLQRNRAVHQILQGLELIK
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