Scaffold Ga0209190_1008033

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1008033
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6510
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058938	Metagenome	134	Y
F085230	Metagenome	111	Y
F099169	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100803312	F085230	GGAGG	MKVSELIKQLQQCNPDLEVYTWNDHDIHAISYVDGDMDEWVHLNLGEKQ
Ga0209190_100803314	F058938	AGGA	MTTHYDRTKITFHRGNAFTPEGIEAEPFATFTIDDLVNHELIEAICALVRAHVNETHMDFCNIKLSTEDWDT
Ga0209190_100803316	F099169	GGAGG	MNQTIAEALAPFRPLTYTEHYYVDLGYRHELGKAEEHEYKRAQAEGADACRLLNRGAMEAMMR