Scaffold Ga0209190_1006147

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1006147
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7587
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (92.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002245	Metagenome / Metatranscriptome	578	Y
F003379	Metagenome / Metatranscriptome	490	Y
F006744	Metagenome / Metatranscriptome	365	Y
F024319	Metagenome / Metatranscriptome	206	Y
F024549	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10061471	F003379	GAG	MKKIQRKTKSFSALIMLIATAILSGVALNKFLNWAGQQEDFFDFDLNEDIDRENV
Ga0209190_100614717	F006744	AGG	MNLDEFKKHVLETRQASKAQALSVLSATITKSTNERENLNG
Ga0209190_100614720	F024549	GGA	MYRLDTYYDGELEYTHKFADALQAFEAFAKCYDVGFANEFATYNLSLPTGKMYTKNFNRIGLVSQK
Ga0209190_100614726	F002245	AGG	MKNEIRVPHTVVFEAIIDLDKIPANLLPALIALDQNSIEQMCKEATLHALGMSNVLPLANENNTWAEVTIKGDN
Ga0209190_10061476	F024319	AGG	MTNRIWESRNDYLVESDAKRLGYVACSAGCGRVTAWSLCTMCGGNYAEHNLVGKGSN