Scaffold Ga0209190

Basic Information
Taxon OID	3300027736 Open in IMG/M
Scaffold ID	Ga0209190_1002310 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027736 Open in IMG/M

Scaffold ID

Ga0209190_1002310 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12944
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (45.16%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

12944

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (45.16%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012017	Metagenome / Metatranscriptome	284	N
F029672	Metagenome / Metatranscriptome	187	Y
F046246	Metagenome	151	N
F083896	Metagenome / Metatranscriptome	112	N
F098560	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10023101	F012017	AGG	MATKRILIGTPLKGDIPKSYFRTSLVMASANIPNVKLDWILLDGPAVQIARNEIAAYAIENNFDEVIFWDKDVLAQRNGADVTDSALMRLIGHDKDIVTSVYASRSLDTHWHVTPLAGEVANEEGLQKVERASIGFSKIKVSVFKAIAHDNPDRVAMLLDPNRAPRSIPELFPMELQGRNIPSYRLQQIKNAMTDCKNDDKLRMRIERELSVRYDEPNAYLSEDYGFCKLARESGYDIWMDTLMVLGHESRVTLPIETPKLMEMLSESWRKEELAVIKTQLIKQNQEAKGKNNNLRN
Ga0209190_100231012	F029672	N/A	MKSHTRTHSEREAAQVRDEQRRSEYTRFAPLSAELAEIYDSRRLTEADIDHMAELTSEGRTYSRSLPPHE
Ga0209190_100231024	F083896	GGA	LPQKVTVKASHSNHANSNMKTSTTGHQIELGEWLRDQCLAHILEHTPDTWVEAFEEKAQRLLRTQGSFTAEEVVSHVGPPPNHVNAIGAVCRAYARRNDLVGSYEKALNPAAHARVIVRWRDANKQ
Ga0209190_100231026	F046246	AGGA	MTFSEHAFDACCREAKAIGRRLNKTEWLEAMQEAYDSYPHEGLLATDTPKVKATRVKAVDAEWLESLEQNPAYAGIDIKRELGKAQAWASVRKVGVSQMRFLNWLNKAQVSDRPIQFNGAGATSFLTPSAQTSSEPKGWREWVRENSTDPSNADRPWNALEAVAQKYILTQLQK
Ga0209190_100231030	F098560	N/A	MKIEMKRPNKQMADSIETMLNDFAKISTIARTLKTQMVTVYRYISYLQYTKVMVSDAELKMIINHRKARKASSAAPSQSTPAPGITHAATPVLGA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209190_1002310

Overview

Ecosystem & Geography

Associated Families

Sequences