Scaffold Ga0209190_1001470

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1001470
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16415
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (93.18%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F004978	Metagenome / Metatranscriptome	416	Y
F010760	Metagenome / Metatranscriptome	299	Y
F018539	Metagenome	234	Y
F019477	Metagenome / Metatranscriptome	229	Y
F022648	Metagenome / Metatranscriptome	213	Y
F041568	Metagenome / Metatranscriptome	159	Y
F072324	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100147010	F041568	AGGAG	MFSTDNQRELNVAINVMYEDQGAAFTSGYLNSMAQEMLALLPKRKQKEFIKGVEKFNGRQLITVKNCLTGVEVEIRREDRGGPCDPSTERFHSM
Ga0209190_100147017	F000652	AGAAGG	MKAYVTTILRQEIEVPEGTSREDVLEFLAENQSFGDAFLGVSDMTQQFRIVGITVLDEEITELGEESFDA
Ga0209190_100147020	F010760	AGGAG	MLDISKIVKTYSGKIGCMCGCLGKYSYTADGAENHGPGYNVDNSVNERSVKIIAKKVLTNPNVQWDGNIAYVEDRVGNRMQAIYFKETV
Ga0209190_100147021	F004978	AGGAG	MITADKLVLLTNMPAAMLTMCAQDAGYKGPEFSSCKFIGITNGGQFCYQAVYHVKGGTDSTKIFLTYDPTEDQVIADYHLTEVF
Ga0209190_100147036	F022648	AGGAGG	MIVHNVQVHPIYAGHINDHKVIREEEFNTREDALMWAESYNRHRDVWNINGWLENGNGFVAVYTGAIDTVSGENL
Ga0209190_100147038	F019477	AGGAG	MSTWEFAEFRIGRLFHCNGNDYIKQSTRTARMLSNGRIFYFGKREVIHAIAW
Ga0209190_10014706	F072324	AGGA	MLQVTKTSDNSYHAVNNDVNNCEAIVFAESVRTGRTMLQVINYVLEEDDSDTNLLCACETLQETIINTYKKQIISEYLDLALYNINNA
Ga0209190_10014707	F018539	AGGAG	MLKSAFNTLAKAKLIYNKKRELYKVVVAFNVHTKIKDNGEIVHLFPTQAKCAYVSGDINYEELQKEVQRITETAKLQLRTNNIEFV