NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1000999

Scaffold Ga0209190_1000999


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1000999 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20184
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000273Metagenome / Metatranscriptome1401Y
F006696Metagenome366Y
F025978Metagenome199Y
F049495Metagenome146Y
F061661Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100099915F061661AGGAGMRYREHYTIQPTARKWADIALAVSIGVGLAFFFLMGV
Ga0209190_100099917F006696GGAMKMLKFLKDYYRDLTPAEVIQRELAQAHLDRLEAEGAVEYAQAVLDLNMTRIERLNTRMEEYK
Ga0209190_100099923F049495N/AMNDIPNFAAWTNENLAKFALDAYLRLQAQQDAMEQLRGDLKDAMKLIRARTLAVDD
Ga0209190_100099927F000273GAGGMSEEKMQNMEAKSQLIEKITFALLPLLFSCVVYLMSALSNLAHEVTILNSKISLVVTSDNKQASNTGAELAREKLRQDLEKEIQRNRDQIAENRMHIAILEEKTTVNKPIKTLTGKE
Ga0209190_10009995F025978GGAGMATNKLKTLAIKEPAMPAFPADKFDVFKNAVMMELTNRKNTHDAVWGIDRLVWLVDSELREKVWLQFERVWQAQESRDDQKLDKAVKGMCKAYDAMEQWAVANNVPEVPNLRQIEHQQADGTVFVIVPDEASKRLYLQQWQGTMDREVWTAAEIAIIMARQADGKISEIKRQWPDSQLVKVGGPSGFDDMDNDLDMTTPSKVAKLFDTKAFVR
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