Scaffold Ga0209190_1000497

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000497
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28621
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (87.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003863	Metagenome	464	Y
F004110	Metagenome	452	Y
F026830	Metagenome / Metatranscriptome	196	Y
F083706	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100049725	F026830	N/A	MVKGETVMPVPEGVITTSEILQPVQEEVVEVSTTEEAEETDDN
Ga0209190_100049730	F004110	N/A	MTELHPIIYDLVPSVANTIHRRYKNHVEKDDIKQELMAWAMTRVEDHTIDLMEPIEERRRHNEQRIAWQMKRAGERYARKEKAAKSGYQTNDEVYYQSATLGQLLPFVIASVIDGTVLEQAQEMIRDGQPKGSSSPAEGGNLLANLIDIKNGFLKLHQEDQALLRMRHHESFTLQQIAQVLECAISTADRRCEQALRRLQDNLGGVSPWQ
Ga0209190_100049733	F003863	GGAGG	MESKEVSGKQAIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWIINPDSRLTIAVHTRANAVPDVAGRTDYDSTDEGHNGGEE
Ga0209190_100049735	F000821	GAGG	MNEEYLKAKFDLCISEAEKDLQQEEIARAIKNLERANSALSRLFGLEEEDSE
Ga0209190_100049737	F083706	GAGG	MEYLTPRGWLVAGILIGLSIWGLWEISSHLLWTGTGYEWCENLLTCEGEGK