Scaffold Ga0209190_1000482

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000482
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29092
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (36.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002621	Metagenome / Metatranscriptome	542	Y
F004206	Metagenome / Metatranscriptome	448	Y
F007030	Metagenome / Metatranscriptome	359	Y
F010533	Metagenome / Metatranscriptome	302	Y
F027822	Metagenome	193	N
F053148	Metagenome / Metatranscriptome	141	N
F102858	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100048210	F010533	AGG	MRTVTYDYVLQRACELTGRVFSTLTTEESNFFRTFISMSLRSAWECFDWPEQTVYEQQYFAANYDPTQLYSAGMVVYFKTEQKYYQYVGSINSGNTPTTGGPNGTLNAQYWANAEPDYGNNDGDWDATTTYTIGQIVLYPDTQQHYQLYATATAGTVPTNSVYWGVLNKFLRNISQTNNPDGTTRAVPIGETFSVWPGDPRVSWRQQEATYTFTDDGVLVGDQLPYVWLEFRKTPPLLSSSAEATAYAFPYRFSEICSLKAAGQMLRVDGKIDLGNQFLELGEVELTKEIDKVALQEKYVRQIIVPSR
Ga0209190_100048212	F002621	N/A	MCNTAKHLMISRIIWLLVLPICLGCQQTKVVLVPSGDPVMLAKPTTASVYGFDKDKNLVGPSKVVLPAGWYVLPKSQ
Ga0209190_100048222	F102858	GGAG	MKLTNEQLSEALSVSEEHPVLKAMGQVIDDTLRDEVLMAILPSLSAEDRAYNAGRAAAIKDLIAQISALRNGRELTSGQF
Ga0209190_100048226	F007030	AGGA	MTATKAESPQMEDPFIYAPQPTSKVQGITQAGTRPSIHVSMYAYGGISAACMMSWVDLTATFARSDRQTDLRTIREDALISRSRCRATKWFLDSGKDVWVQLDHDIEFAAADVVRMAELAHKHQATVCIPYSCRSLPARPALRPKVEHLQALKHQVNDAECASELVPITMFASGCLAIPRKCLLATLEMLEGSAVQNPYRIDWCDDVRVERFPTLWMPFAMESMPGKLEYLSEDYAAAVRMTLAGVQHYSMKPKKQLNHWGEFPFSFAPYAG
Ga0209190_100048227	F053148	N/A	MEAPRLIKIGVQRGWLSYPKNMAFKEDGTPAPVMQDEPEVTEQRHTPDLARKAYDLRDRGLSLNDVAAACQVPRGSVVYLITKGHELYLASQRKDIEP
Ga0209190_10004823	F027822	N/A	MNKLGQLYFDAAGGNHNAVVFITAFHAYCHAIDDLIDGDVPFTPEAFLDVMMQANSLYSTPFYIDNWFRLQPVIAQITSTYADSVAWEKADDEWKRQTADVLRLCGNDMILQVAWIIGGYKHMRAISLKLREFAYHSQHS
Ga0209190_10004827	F004206	N/A	MIPQITDYFLAKMPDSFKGWTREAVEDYVMFHAEQGTLKIACQDDHVVAVLVGWRQTGPEPQAWSWQPNDPNGDHWYWHQFAADCALFAMAVAAKFFHDRPESAILPAIGHRNGKLVTYKKGSMPIYKMAYKKHGNIS