Scaffold Ga0209190_1000314

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000314
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35736
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (25.53%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008936	Metagenome	325	Y
F024717	Metagenome	204	Y
F025680	Metagenome	200	N
F033329	Metagenome	177	N
F034061	Metagenome	175	N
F048156	Metagenome / Metatranscriptome	148	N
F057894	Metagenome	135	N
F059603	Metagenome	133	N
F060610	Metagenome	132	Y
F065376	Metagenome	127	Y
F065768	Metagenome	127	N
F079784	Metagenome	115	N
F085061	Metagenome	111	Y
F100269	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10003141	F048156	N/A	MNLLKTIIERLNQRVEVANIFDKQFGLCELNANGNEKAWVHYIGNGQAEVVTNFDAKQGTLFWAKRGKVTVAKTDAYKMSGCKQLYVTSFPLTAYAVVRKSHLPCDADDAQDWLASRIYKLTSGTDPLFKQSIAVINYEVIPSGYTNEIKTLTAHYEWACVSIDFDVQVITTTEDGCYDI
Ga0209190_100031415	F025680	AGAAG	MKYITGLKGRLRSLLGSKKTTHNLVEVFTHEGHTYYRFPKEVNLPLERFSMSMSLLERLSSGVSGAEMELILTEMEKALGAGLSNPKNAALIGAYIHVIRERQDTVIHRDILLNIAATWLVRDDEDPNIVNSDIHNYKLELFEQLSKGGAKDFFSGLGIDPLMPLLTMSPEDFQTLWEYNLVQQRNLKESLFRLNSHREQGRRKQATT
Ga0209190_100031417	F065768	GAG	MSVCSPCYDAGSYVNACLTEFSFGTLPADNTEYIVWLQHNATKKIMQFTATTDGDGYINIEGIQLDPLQGYTIWATIDGVEQDITVDGDTYKCLSFSAASVGQSPVVIP
Ga0209190_10003142	F024717	N/A	MATPKEISGRIDALFSEWSGGFTPLFFAVLDMRREMYIRIFGTGTSGGTNTAGQTLPTKPYTPAYAAIKAKNGRPPLELTGFLKRSFATDQGSVFNEGFGSAIYIQADESGKAAGLQKLYGPIFQPTAEEQAAMLQLHADLLVEQISNQISKP
Ga0209190_100031422	F057894	N/A	MTMAANRWRSGYMRIQDDTFTGYLTPIGSVQDVEVTFKVKAMQKIMEASEDIQMEVPNEYLIGSLRQNDEGYFTADVIIYNKVVRLKLTEDEIKRSKTLSL
Ga0209190_100031424	F059603	N/A	MTTEEKIIKTMNDYYPIEGKIVDGCVTYHSTQRTHESFRQHLMNANPDSIVYSYYLSRCARWIKILKLHNQKLIPIFEPNGTKD
Ga0209190_10003143	F034061	N/A	MKNGERCKPLLFYLSLYQITNSMCYDSLLGLQGCDRPEPTTGLYIDDLGINQTLLGQLITDQYNSGVELFEAKRAFAWRKMSTDILSRLNPMMKADTVVESKRIGQVVSNAANIDTAVGAGKYTGIRVTIDPNTTSFLNFYLSSFKIDIYTMATPVEIFVYDMSTLKLIDSFFYQSEAVEQFIGKTFKANRRKLDLAFVYESLYDTTKMIPKKGSCTDCGGKLRAVHVCPFVDAIGIELTTDGFNVLSSKSKKYTQGMSLVYNVNCDREAWLCSIGGLMAMPLAYATAVEIYNYGLTISPNQRVNTTVSINTGFATSDPNDGMIAGRDIAATRYNEELSAMLQNMRLPDDNTCFDCRKNMKYVTALP
Ga0209190_100031431	F033329	GAG	MSRDIYNSIEAINASSIKRHFTGSIQYAAGALERGAEFHRNLLETEPSAMPPNAKLIYDAIMKHPMLRLIFEKSAKEITFIKEIEIDGRKVAAKGILDLHCPMYSINADIKTTSCTNLRAFASDMTKHYNHIQAVWYSYLTGYSPTNFYYIGVPNKFKGELFIYRHTTEEIDTAENLIKEYLVHRGL
Ga0209190_100031434	F085061	N/A	MSPFDNIHYEFTQFNRYLDTIIDPREADDDSMQAKVKEAIIQAYSNGYHDGQKAIFDRLPKPMASGGDQGGREYYDAL
Ga0209190_100031435	F065376	N/A	MNAANIENISEFYKALNSTEVLRAQSMIEGAPQAIEDKLSYDMSAESIKAANDAIKQIEINRKLVTLPLDAYKKSLMDVERDATAPLKAYIDQRKAMMIDYSNELERKKAEADAKIAQEAADALKTADSSNVSDIFATFTDATTTTTLELDHTKNIRISKKAEIVGEVDWVTLLWTLMQAEMFDVAELLRKLPKAMEITNIAEIKGIEIVEHKTQAIR
Ga0209190_100031438	F100269	N/A	MASVRTETIYLIAIIVLVFLLLKSCGENVSNDYRLKHTIYEDSLLIASQKKIIAQSSSDAAKKAQQIAELEVKVKNASEVVKIETKTVIKTQIKLGDTVMIDKKPYIQLPKPFLKKTEWYTIGGMINRLGWLQIDSLVIPAKFTYAVGDTMRTGFVNRLLKKSDTVVRLRVDNPNMAITGMENIYIKQEKKWHQTTAFKLGVGMIIGVAVGVTAK
Ga0209190_100031441	F060610	N/A	MDDGIDSVQVITTLDEGCVVGIGCKVHTHHHRIEIKPQVIYQPLHNFTIFGKEYCTNQWGQTFEIAADEPMPLRPTMQHTYASDTIQPSNSAFLVKPKVEQKIIIKPRTEFRKYQPTMDAPVMGMLLTFTIYLTAQWAWSSMGAWSNLCSELKQCLRYSS
Ga0209190_100031442	F079784	N/A	MTRKVSKPRQVLDIILKYWRPTVGSLVILSSVFALIFKQITTETLAAIVAAMVAAGYIPKSNSNG
Ga0209190_10003146	F008936	N/A	MASFDDLVKQKIKLLENVPEEIATAAERAQREAWRKIAPMLAEMDIDADGNIAQTEDNIRRIGGITEELNKVLAGGEYKGAIQSFLASIDEGVQLTDDIAKKIDNSFKPDNVQKQLLNISKQNAINAFFGSGLRERVTQPFLEQLTANVAARAPLREAVKALQGVIEGTDSTDGRLLANVRTTANTAQAIADRSYAAAVNEELGIEYFQYLGGEIPTTRSFCEHREGQIFHRKEIEAWGEGKNSGGINDIRNGTWDGRIEGTDSRSIFTFVGGWNCRHYLVPVIKQKVPATVQARAKSEGFT