Basic Information | |
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Taxon OID | 3300027736 Open in IMG/M |
Scaffold ID | Ga0209190_1000296 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 36299 |
Total Scaffold Genes | 52 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 42 (80.77%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 6 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006696 | Metagenome | 366 | Y |
F025978 | Metagenome | 199 | Y |
F061661 | Metagenome | 131 | Y |
F103126 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209190_100029621 | F006696 | GAGG | MKFLKFLKDYYRDLTPAEVITRELAQAHLDRLEAEGAVEYAQAVLDMNMTRIERLNTRLGEYK |
Ga0209190_100029623 | F103126 | AGGAG | MSEMMQMQIDEVVEQLSPIPGQIGILTAHELRSHLRMAVTKGTLIGWAGAERLTRTRYKQDYDNLVQHCKQLELEIMELKR |
Ga0209190_100029624 | F061661 | AGGAG | MRYREHYTIQPVTRKWADIAMAVAIGLGLATLFFLGV |
Ga0209190_100029633 | F025978 | AGGCGG | VVTKKLKSLAITQPTMPAYPADKFEVFKNAVMVELANRKNTHDAKWGIDRLVWLVDTELREKVWLQLERVWQAQEERNDEKLDKAVRGMCKAYDAMEAWAGANNVSELPNLRQIEHQQADGTVFVIVPDEASKRLYCQQWPCSTDREVWTAAEIAIIMARQADGKISEIKRQWPDSKLVKVGGPSGFEDMENDLDMTTPSKLPKLFDTKAFVR |
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