NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1000296

Scaffold Ga0209190_1000296


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1000296 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36299
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (80.77%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006696Metagenome366Y
F025978Metagenome199Y
F061661Metagenome131Y
F103126Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100029621F006696GAGGMKFLKFLKDYYRDLTPAEVITRELAQAHLDRLEAEGAVEYAQAVLDMNMTRIERLNTRLGEYK
Ga0209190_100029623F103126AGGAGMSEMMQMQIDEVVEQLSPIPGQIGILTAHELRSHLRMAVTKGTLIGWAGAERLTRTRYKQDYDNLVQHCKQLELEIMELKR
Ga0209190_100029624F061661AGGAGMRYREHYTIQPVTRKWADIAMAVAIGLGLATLFFLGV
Ga0209190_100029633F025978AGGCGGVVTKKLKSLAITQPTMPAYPADKFEVFKNAVMVELANRKNTHDAKWGIDRLVWLVDTELREKVWLQLERVWQAQEERNDEKLDKAVRGMCKAYDAMEAWAGANNVSELPNLRQIEHQQADGTVFVIVPDEASKRLYCQQWPCSTDREVWTAAEIAIIMARQADGKISEIKRQWPDSKLVKVGGPSGFEDMENDLDMTTPSKLPKLFDTKAFVR

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