Scaffold Ga0209190_1000073

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000073
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 65310
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 88 (89.80%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000273	Metagenome / Metatranscriptome	1401	Y
F006894	Metagenome / Metatranscriptome	362	Y
F007519	Metagenome / Metatranscriptome	349	Y
F008879	Metagenome / Metatranscriptome	326	Y
F009953	Metagenome / Metatranscriptome	310	Y
F011292	Metagenome / Metatranscriptome	292	Y
F011374	Metagenome / Metatranscriptome	291	Y
F014358	Metagenome	263	Y
F019438	Metagenome	229	Y
F037636	Metagenome / Metatranscriptome	167	Y
F042869	Metagenome	157	Y
F046909	Metagenome / Metatranscriptome	150	Y
F093280	Metagenome	106	Y
F096621	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100007318	F007519	AGGAGG	MPTGIEELKLIKPKKGRGLGKKPPLFCTSLRLPKEVMDYFNTKYPYTKQAKMREILTEYINSQMQGANNGNS
Ga0209190_100007319	F046909	GGAG	MMPPPSKELCLMMAKINYPRDEKLSWTWLFAWGFHDAYVDGWYEGVKL
Ga0209190_100007323	F093280	AGGAG	MSPKIEALIKTSGCADVGELFDQTIRLGKVLHQFKQENGRPMDATEMKYLEAVVHATPQEKT
Ga0209190_100007324	F011292	AGGAG	MTPQSFDIDTCKEVVGDARMRTIEAKARQDADNGVVDAPKEAKGTYWDKAYSYMEYIVYITAHHKRLERIQRMKEKNT
Ga0209190_100007326	F042869	AGGGGG	MNKLIRKEDTIKNWVPIGSLELKLAVAKAEGYAIRVDETRYHHVVDGTVVTSVDESKPKYYYYGPQQLLLSMFNPYRIAMEFYLKEKSK
Ga0209190_100007327	F019438	GGAGG	METIATTILLGGLGFIVCGLVLIGLMRLWFWMDENERGDR
Ga0209190_100007346	F006894	AGGAG	MSDFDFYWNYRIVNTKTANGGEDWYCIQEVTYYDGKPDGYGDPCLGAEDMETFGDVWHMMKEAMELPPLQEEDFPPQGEM
Ga0209190_100007347	F014358	AGG	MMDLDWKECIDCGDDVPTARYQAFCIFCERDREHSAQEERTSWCIVQEYTKGNYQYVTANSAPTTLKQTNPKENRA
Ga0209190_100007352	F009953	AGGAG	LNDYKLLAVAAKEIEKMRQEQIAFVAASRADTFDEYKKVCGVIRGLNLAENVINDLVQKMEKSDD
Ga0209190_100007374	F008879	AGG	MATTFKKGDVVKAIAVIPQGPVLALRMSEDGVFSYLIEWTDTDGATQQRWFEESQLTGA
Ga0209190_100007381	F037636	GGAG	MIKLELPIDAVNMILGALGELPSKTNAMALMLLIKEQADPQVPKEEPIAETVQ
Ga0209190_100007387	F011374	N/A	VGGALSKFFKGHAELEASHEKAEVQREDNQKKGIKDDLATQAIDNVMYLRQTKQFYADLEKMVRWEMGMPDMWRDIVEEYQRLLDQKSEQAARELYEKRVKAWRRQRLKNQILDRVLETVVVVFVIGYLICLMWIISLHHRGRLDTFLS
Ga0209190_100007389	F000273	N/A	MTEKLEAKSALIEKTAFALLPILFTCVVYLMNALSTLAHEVTILNNKISLVVTSDNKQASNTGAELAREKLRQDLEKEVQKNRDDIQVNRMHIAILEEKIGVTQRIKGK
Ga0209190_100007393	F096621	GGAGG	MGFKTVTPPRLPSAPTEYNAQYQEQFMNILRLYFNQINAPLPAIFASAGVGTTGVVAGLTFAQPSSTTSGQFVISLPTQADFANLRSGDIYYDTSGGVATSYPLRIKA