Scaffold Ga0209087_1031775

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1031775
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2519
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F012975	Metagenome / Metatranscriptome	275	Y
F014140	Metagenome / Metatranscriptome	265	Y
F077310	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_10317752	F014140	N/A	MNTYKVKMDVELEVTAFNETDARDYVGDIFNIDDEIKKVSIVKITEKNK
Ga0209087_10317754	F012975	AGGA	MLNLTLKGVEVFIQRSKTKSQESYWDNYDLLIWKETPGGFTHIKGMFRKDQWGVAERIAANEQGIWKLPSKYVKHFK
Ga0209087_10317756	F000473	AGGA	MEFINKDKDHFKYGVNEWTGEPNKPVFYTPEMAKRIREIKKPDMSLQMDIARYPEFLAIRLYEDNFLKYEGIKKEMVIDYVGKVKKLIESYGVRCELEGVPSARILRNN
Ga0209087_10317759	F077310	N/A	MTLDANSVIIVIVASILSGMGTALVAEIKESKREKIRQTEREQDMLKMELKDLEIKLYKLEKDLTEWRDKYYEAIQELIEVKAELEDTLIKLTHIVMHE