NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1012623

Scaffold Ga0209087_1012623


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1012623 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4280
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (95.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019438Metagenome229Y
F036230Metagenome / Metatranscriptome170Y
F042869Metagenome157Y
F046909Metagenome / Metatranscriptome150Y
F059768Metagenome / Metatranscriptome133Y
F091642Metagenome / Metatranscriptome107Y
F093280Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_101262312F046909GGAGMKAPPGKGACLMMAKITYPRNQELSWKWLLAWGFYDMYVDGWYGAKA
Ga0209087_101262313F036230GGAGMNDIVIGDIVQVTPDKEMFGACMVVVTEVKSWGIQGYVQSAGVPGQQYIRLANDDFESTGGKAVWVIGEQA
Ga0209087_101262318F091642AGGAMNSDQKFWLGIWGMVLAFLVALMVCITINAHGKRDKWEKAVSNGADPMVTTCALYGGETTGDLAICTILAQGRK
Ga0209087_10126234F019438GGAGGMETIATTIILGFIGFMVGGLVFFGLVHLWFWMDEEDRRDR
Ga0209087_10126235F042869GGAGGVNKLIGKDDTIKNYVPIGSLELKLAVAKAEGYAIRVDETRYHHVVDGAVVTSVDESKPKYYFFNDRPLPMLDPYRIAMEFYLKERT
Ga0209087_10126236F059768AGGAGMTFQEQIKALPEEERLKFFRSIMAVVDAGIKAGVPPEEWGKMYADTYKNIEEKM
Ga0209087_10126237F093280AGGAGVNSKIEALIKATECADVGELFDRSIRLGSFLHQFKQEHGRPMNPTEMKYLEAVVHATPQEKT
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