NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1011220

Scaffold Ga0209087_1011220


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1011220 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4567
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004231Metagenome447Y
F014489Metagenome262N
F015570Metagenome253Y
F024504Metagenome205N
F032957Metagenome178Y
F079815Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0209087_101122010F024504AGGAGMDRQTVGITAPYRKSDYTYQDMLLDRIKDLEALVAKLEQRIKVLEAK
Ga0209087_101122011F015570GAGGMNEELDRAFDLLEFDVTDQIRNSAYLAEQRKISTGVTDGTVQRALVRDLTENLRTLQTSNDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS
Ga0209087_101122014F004231AGGAGMSVKPSDFKHEICVYLEGIGECLVCFDILTPGDELDADHSDDYEIDFSVFDEDDKHITYDITKKQYNHCENKAMDEMLEITTQWHKEWESV
Ga0209087_101122015F014489AGGAGMELKQQHISILKRLAHGASSLKRFTDKDTEVGNQGFHYLRYLNDLQNFGLALEIDEVWHITGFGVAKLAEQTPRVNKDRVAAGTITETYDGADLKNGGNRVGASDFLKYPSKFGDNLVLPRVSL
Ga0209087_10112207F079815GGAGLNDYSTILMRIEQSVKTLDKKCLNKKYDGFIQDISAIQNDLVMLSHWIGEEQVKQSQYLNRSKV
Ga0209087_10112208F032957AGGAGMDTTQHEFLPTTRMFPRSLREAYPKDYVNKNIIEGPFYSAPNIHDIPVLFGLITVLGMIAVAIWRYF
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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