Scaffold Ga0209087_1010905

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1010905
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4639
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F017469	Metagenome / Metatranscriptome	240	Y
F037113	Metagenome / Metatranscriptome	168	Y
F076901	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_101090510	F006842	AGAAGG	MKATPAICGDHLVPISECDCLSYMREIARSAERLIQLAKEREGMK
Ga0209087_101090511	F017469	GGAGG	MKSICQFCGWGIAKPEWYNNYNKAYACDDCLMDKDIEHYKEREGASI
Ga0209087_101090515	F076901	AGGAGG	MKIWVRNGLILTVTLGLLVVGQGKLFTPPVGRIPDGVIENRKATQDEKNHNRKIAKAYASAGFGWSGRESECLLALWTSESRFDNYAKNQRGSSAYGIAQLLGEKDSRAEYQIL
Ga0209087_10109059	F037113	AGGA	MTWTVWVGGSEINWQHYSHKIDAERVAEFWREVKGYDDVIVEKVTV