Scaffold Ga0209087

Basic Information
Taxon OID	3300027734 Open in IMG/M
Scaffold ID	Ga0209087_1008000 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027734 Open in IMG/M

Scaffold ID

Ga0209087_1008000 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5531
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (7.69%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5531

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (7.69%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014956	Metagenome / Metatranscriptome	258	Y
F031483	Metagenome	182	N
F033801	Metagenome	176	Y
F041648	Metagenome / Metatranscriptome	159	Y
F052398	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_100800013	F033801	N/A	MKWEIKWKTGKVITEAPIIESEIQKFKELGIDIPEKEISIASFG
Ga0209087_10080003	F052398	N/A	MNLPAIAMTIEEKIQDIQLVIDNREKRLFKTGIIESLPKINMVVKNILPLYGIDASPEHLTEVTKFITTYKLIAVDEIKLAFEKFARQELNIDEHKLYGKVDLAAIGRILTAYITWRQKVYFTVDMEDEKKRLRIQEEQRQVEAKRKFYAEFPEMLSGFKGESYEDVPVYWYDAAMSAGLIGYADGEKRAIWEEAQEIAKKQKIQADSYIDFKTQLHRVEEEGKKRAIIIAQKLAVWRIVLNKA
Ga0209087_10080006	F041648	N/A	MNFITEKMDTLQNTLTDNALTRYYELRIKYLEGEKERLQNEARFDYLITLDFWIYAQRMIESYVIFHKESPHEYYLDVLKTILKNLESHNEKSFDTSINRLRLEVITRCNEAIIKCEQITAAR
Ga0209087_10080007	F014956	AGCAG	MKIQEFALNVSITVCPSHIVEPLHLKKWWRQRGVGELEKWFVSGNAINYNDEIDWKKISDHKKYLWYDSQNFQINMGHEYSKRQG
Ga0209087_10080008	F031483	N/A	MNILKGRVKYTAGKVFEGQYGPSINAAITLDNGTDIRVYGKPDDNKLMALKKDDVVTIIHDGKSYKVAFDMVTANEIPEKVNTPTETNNVQQAANVAPKTNVKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKFF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209087_1008000

Overview

Ecosystem & Geography

Associated Families

Sequences