Scaffold Ga0209087_1003853

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1003853
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8234
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014118	Metagenome / Metatranscriptome	265	Y
F039511	Metagenome / Metatranscriptome	163	Y
F052457	Metagenome / Metatranscriptome	142	Y
F053987	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_10038531	F053987	N/A	MMSNVFEPVRIKGKLFAKNTTTGSIAPKDAIRHIQLLNAEKNREVLVVSATGRVTRVPAVDMGVALTPPPAAKLSFMQAKQTQDPEDMFKNIERLTKMVGRGIQPSLVIT
Ga0209087_100385310	F014118	GAG	MAIGKKNSGFYKQDAVIGRFTADARKPQELNAAVRQAMAQAERNRLYREAQLANQKPRFI
Ga0209087_100385315	F052457	GAG	MTKAKKVEFGITITKPWSKEMYAHNELVADVVRNEVEARWIAALMEFQKEFDGNDEMLECEFTNASDELKRIQKAITCYGFGFGYDVSQVAERVMQELDEAALYRLKDIAEELGLELEKGFVGFS
Ga0209087_10038532	F039511	AGGA	MKKELRELEAKLKALREAMERYDVFQQDDEVGQALAEVEAELGLKKV