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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027734 Open in IMG/M |
| Scaffold ID | Ga0209087_1002213 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11006 |
| Total Scaffold Genes | 31 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (58.06%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007166 | Metagenome / Metatranscriptome | 356 | Y |
| F014955 | Metagenome | 258 | Y |
| F016143 | Metagenome | 249 | Y |
| F017107 | Metagenome | 242 | Y |
| F022156 | Metagenome / Metatranscriptome | 215 | Y |
| F027399 | Metagenome | 194 | Y |
| F027764 | Metagenome | 193 | Y |
| F029048 | Metagenome / Metatranscriptome | 189 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209087_100221313 | F007166 | GGA | MGELNQLMLEMEERLEIALDNMEFGTELDQDDIDVIRAACGKPNNKRNVLLQNVFDDFGNVFGGTK |
| Ga0209087_100221317 | F029048 | N/A | MNMLSHIKDVIGDKAIISTEPFGVDEERQLIAFEVNDLAAVLRDVIQVCADCCISATDREAILELLN |
| Ga0209087_100221321 | F027764 | GAGG | MNIQIEIVKENKDGSADALVHFDKEGLEILVEAGVISILRQYIKQEKKAKKRKK |
| Ga0209087_100221323 | F016143 | GGAG | MDNDYIYTPVGTDITIRWKLHGYVPPSELPEYLAKWKYYQELPLRRLDDNAKKEYELVMKKAKVMRVR |
| Ga0209087_100221327 | F022156 | N/A | MDNLDKDIVKEAIKEWLNEKVTQFGWFSLRTIGYAFVALLGYMWLSTHGFQLPK |
| Ga0209087_100221328 | F027399 | AGGTGG | MNFTFTWILDKFGFTPKVETFDFFVEKKPVAKKATKVAAKKTVRKPTKK |
| Ga0209087_10022133 | F017107 | AGGA | MTDYSENYLRIQKLLKCYHTATLKNQYEKATKIAHDLAEETIKLEFSTYEQVRKTWLS |
| Ga0209087_10022135 | F014955 | N/A | MGNLQIMDIEKYIVAATGLGYLVVGLAQYFKGSTSNAFIWLGYAAAQIGLWMNLK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |