NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1001292

Scaffold Ga0209087_1001292


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1001292 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14749
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (86.96%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012870Metagenome / Metatranscriptome276Y
F017479Metagenome / Metatranscriptome240Y
F019137Metagenome / Metatranscriptome231Y
F022650Metagenome / Metatranscriptome213Y
F063695Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100129215F017479AGGCGGMKELKTAAGSWARAFLVAVISMAAAGVSDPKALIAAGLASVLPPVLRYLNANDTALGIKK
Ga0209087_100129219F063695AGGAGGMHITYQDFDLLTDSAMGWKGNGWEIQADRFTDRVSFKWAVCYWVESPASLILARTFLQDHDHPYEQSYDQSMESYILLTNYDAHKLAVSA
Ga0209087_10012925F022650N/AMPTPAITTLRTTLATALIDNSRYSTFAFPPSVVLANSLIISPDDPYLTPNNNSQITVAPMANLKIILVVALFDNEGNLNGIEDFVVSVFNKLYNSGLVYNVSAVSAPSILNAASGDLLSCEMSVSILTRWE
Ga0209087_10012926F012870GGAMTDMAQWEKENEAFLIKIGQVKPAAPKPVTKKEEE
Ga0209087_10012928F019137AGGMAKLKIVRTDGSIVEGEITPAVEYFFEQQTKMGFHKAFRTEELQSHVYLLAWEIIRRSGETVKPYGMEFIETLKNVEVLDSDPLA
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