NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1000295

Scaffold Ga0209087_1000295


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000295 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33073
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (65.28%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F000684Metagenome / Metatranscriptome938Y
F002598Metagenome / Metatranscriptome544Y
F006385Metagenome / Metatranscriptome374Y
F007691Metagenome / Metatranscriptome346Y
F017133Metagenome / Metatranscriptome242Y
F066789Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10002952F066789AGGTGGMTCTKYGCDYQLDLDGQVTCAVCGAMDDDASTPITLDMFESQVDFE
Ga0209087_100029521F007691AGGALNTIDDLINEIYESNYSHLEFEENMGGEACDCHIHTTLNTIAHYAEIEVGE
Ga0209087_100029529F000684AGGMTLGGYTYQIGDLFTTSKTGVTGRIAGFESMSNKVTRVSLVLANGSRRLAMVKTSK
Ga0209087_100029536F000447AGGMGYIEIFRMNESGAGWVDFSDATPDELFTLEVGLLNEGALFTTKEAD
Ga0209087_100029537F002598GAGGMATKLYTIPDLLIGKNYRSRTRHFEGEIVSARPAHPAIWYGENTEAYLIEINYKGSIRNKFATVAVKVGE
Ga0209087_100029538F006385AGGAGMILDTGTLIAIVIALAGSSIMMLVFWKQNIEQQKEIRRLQIALRNERLKK
Ga0209087_100029545F017133GGAMSIWTKFATVSDYPKGLMNLCPCGQVVLAPAMYHEGFPWWENPNKCKELFEGVTK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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