NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1000269

Scaffold Ga0209087_1000269


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000269 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34188
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (63.79%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007848Metagenome343Y
F017287Metagenome241Y
F027399Metagenome194Y
F035159Metagenome172Y
F046243Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100026916F027399GAGGMNFTFTWILDKFGLQPKITFTEAPKPAAKKVAKKTVKKTTTRNTTKK
Ga0209087_100026924F017287N/AMDTYIRRVFEGESPCDRCDQQDDCKEFELACSAFSYYVLHGTFYEHTPRYATHRLFNKIFKEDDKALKNYLKSVRAREEMGIHDLFEE
Ga0209087_100026933F007848GGAMKDFLGACLLGAVLGAMFAYGIPAKAQTIQLTDSRGYSQGTVQINGNTAQFVNPQGYTTQTATLYPNQIVIQNSNGTTVVGTPSYTVPPSPTTPMSPRVMQ
Ga0209087_100026950F046243AGGAMKHMTRSYPPENAMLRPHKESTLEKQQKKRQDHNPPLELDDSNILNRKANQRMKRKQALMDAMNKNHDPDIVG
Ga0209087_100026955F035159GGTGGMFQTAFQVNAFQNDAFQIVITPVVTKNGGDDAPYTREELKRLKGIQKKLRQAEEKRIAALKSDAENRKQTIADLVDPKPVAKKQQTNIQSNQEVSVDIPSNLANIDRYIANLVTQQQDLQNAVLIRAAKLRLEQELAILEVKRQAELDDEEALLALLL
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