NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1000099

Scaffold Ga0209087_1000099


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000099 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53198
Total Scaffold Genes92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)79 (85.87%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016801Metagenome / Metatranscriptome244Y
F025983Metagenome / Metatranscriptome199Y
F051704Metagenome / Metatranscriptome143Y
F079981Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100009917F016801AGGMTTLVAIQGDGWSVIGCDSRASDEDGRYMELATSKIVNNNGVLIAVSGASRGGNITQFGWKPPKPGATIDLDTFMTKKFIPSMRKAFQDAGFEGKEDGDAAWQDSNLLVSIRGVIYPIFNDYSWDREARRVYYAGSGGDVALGALEALNYAKISTPESAEKVVRRAIEIACKHDIYSGGEIHTYIQEA
Ga0209087_100009946F079981GAGMATAFVALDGVLRTEVGDPIAEGVKLYRILAENYRVIIASDHSPELTEHWLRTNLIVGYGDIYDNRYFFEGQDLRSRQLAIAQAQGRVDLFVDPDADRCAYALSKGVPTMLFAAPKFVRRSRDVRPWQDLADEVERQRQALMDAQLGSNVKRFE
Ga0209087_100009953F025983AGGAMATNKSRSLNTSMNDGATDGKYRKVRPNTTVADPSTGDDIMRANRSGLNPYWNYDFIEQEATTKVNPLSGKSSSARRAPMPVADITNNQMGANY
Ga0209087_100009960F051704AGGMHDHEQMLLTTGGGITEMQLMWIIMGLMAIHHAWMWWKMRKNKCGCK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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