Scaffold Ga0209297_1061942

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1061942
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1666
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F017133	Metagenome / Metatranscriptome	242	Y
F027847	Metagenome / Metatranscriptome	193	Y
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10619421	F093845	GGAGG	MIKVTLTTVSGTSRGMEFDTKEHVLEFIELMTSTLSLGVAVCIDAPLIGIHNGWIQGKAKEMAL
Ga0209297_10619422	F027847	AGGA	MNPFTYMIDWLDENADYAPIGAFIGVVIAIALCFIFGGN
Ga0209297_10619423	F003965	AGGTGG	MTTLEKMTVCVEHNPMKSAISEVVDTQYTFCQDCENNIERWYNDTDPERWAFWTDWKVSK
Ga0209297_10619425	F017133	AGGAG	MSIWTKFATINDYPTGLMNLCPCGQVVLAPALYHEGFPWWENPNKCKELFEGVK