Scaffold Ga0209297_1040831

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1040831
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2129
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023346	Metagenome / Metatranscriptome	210	Y
F029753	Metagenome / Metatranscriptome	187	Y
F039627	Metagenome / Metatranscriptome	163	N
F045085	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10408311	F029753	N/A	EVSLSLFERGLNGRTLCWSERLRWCWQILRYGKPWSDFIILNTENQKQLKDFLNEVQKL
Ga0209297_10408313	F045085	N/A	MNNLYKVIDLTVGLVFGSIFAIGLLIVLTIFFVVLVPFIFYFTVKEVLKALTKTK
Ga0209297_10408314	F023346	N/A	MKHTPTIVSKNIIITYAQKIRNVQSEQIDPYIELIEQELIKIYPELKDREDNALNWAYDIINETSNNDVVETLNRLDGIVTNERKEKWVCGYCGKNTYNDDCEYLFGKNHIGCALEEDIKNREHSDPDYILDARLRKITEIESKLNHYESELDKLHFELKRMRSDYPHEPTN
Ga0209297_10408316	F039627	N/A	MTASFYKTVYQRKFKEMPRWKQLAIVEDSTSNNWSGLLTDFVKAVIEEAEKEYANSKSTVANPPNKYVSETDNKSKKIIKKKN