Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1020721 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1020721 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3131
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3131

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F004232	Metagenome / Metatranscriptome	447	Y
F005206	Metagenome / Metatranscriptome	408	Y
F006135	Metagenome / Metatranscriptome	380	N
F016253	Metagenome / Metatranscriptome	248	Y
F016961	Metagenome / Metatranscriptome	243	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10207211	F005206	N/A	NNMTFKVDRASAEVKPFAAPGEYTVTVNSCKDDGLDKSGNAVATLRYKGPAGEVISDRFVLKDTMMWRLQALISATEANIADGDEFDFSVGGAFLRFLQGFVGLSLVIVIEEEKYIDKHGAEQTTFRVRRMKKVPADLDAI
Ga0209297_10207213	F016961	AGGA	MFDPMNTVITIVCMAVLLPFCVIAGIYVGHSLTVRSQQTKTNEQNNRSL
Ga0209297_10207214	F004232	N/A	MNKTIVACDPGVNGGFAIHTKDGILLFAMPESLPDMAQLLSGFKVADSHLWVEKVPKFVSKLTPAAAMATLHENYGIVQGVSYAQGYALHRVEPKIWQEPLGLGGRKACATGPEWKRKLKSKAQELYPQLDVTLKNCDALLILHYALGGGR
Ga0209297_10207215	F016253	GGAGG	MSDKIKSFIDGGTGVYSISKKEAGEIHKAAKKVKNHEVSYWTRNRKKKEAK
Ga0209297_10207216	F001259	AGGAGG	MKDSPAFIYVHKTNGTIRVECLDTARNIDGNPEWKHVSTVNAHVILEQILRAKEKDRNKIIKHLLT
Ga0209297_10207217	F006135	N/A	MSVRIKIENQTEVPVLVALFEQPKCNDHPTRSAVLKPGESCDWGSGSVPLGNYQCYAVMSGDASSHDEWVWHFPGIAEVVAPLELGFKLWHAGDIDWANVKAMSSDDLNATFGSTYTSAKSSTKSWNGMSSCIFHIRGGPSWVEETEQVGIYRPKTVAYNGVQSTPMKSE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1020721

Overview

Ecosystem & Geography

Associated Families

Sequences