Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1005188 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1005188 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6728
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (30.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6728

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (30.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001055	Metagenome / Metatranscriptome	791	Y
F001725	Metagenome / Metatranscriptome	645	Y
F023093	Metagenome / Metatranscriptome	211	Y
F083898	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10051881	F023093	N/A	SLGQGKKIVAGGKTVRITTQTYKPASAWITLVVIDDNQ
Ga0209297_10051883	F001055	N/A	MGTASIRHIVESTVATYLSTQTGLTTVTFLTGDSAATQTLPKAVVLCEAARAPSDLPEGLGNFSCSVRITLFSNADDTTLADHRLRCAALSGNMRDLTSIKAAFTATGDASCYDVTMQSEDEGIDERSWATSFSFDILTVFPA
Ga0209297_10051884	F001725	AGG	MAAINNGTTCLYGVAGTVTNLYVQSYSLSSSFNAEATVVDETGLTKTHRLDDRKSEITVEGICKTSSMPVLGAALSFTLNAQTAYPSGSASVSFAGTVTKIDEKGSNKGFTAVTVTAIDYEGITPA
Ga0209297_10051888	F083898	N/A	MTIQPGNGYNFVSSSQGTSLNVDKPWTPPIGDALVFAPEFVLGASNLPEQLVYGDGTGGRPVPFQCQIVSINGERFLQIGVGAIGYTSSAMPLIKAGAETRIMQAFANKLQICPSGMRTYGDLYPIYPYDDPSYSLTWWMEDGGGYKLSDTNDPVTLYAFKWDVAPGVAPFSTSTVVNTGLPTLALIASSNSTDANKVAVDPGPSLYVQTMNVQKMTGYDHASTGLTGDWGHCHTSWLNPAKLGYSYKAIATVTPSANTFAMVGSIERPGIPLVQNQVQHISLIGVASGGAAYISCGAGTSTVPFPVTTFWDATTPVYSDELTLAECLNSIPAITFTVGGGPVSIAFAGNVEVSRTTEGSYYVTFCNELAGLNAPLLTFNTAGVTAYDYDFDITQYHTGNIDLTTPMQTGMVQLRNVPGEDEADDPYNVNYAANWDQIVNKAECVACDGFTGDVTTDGMFNITGATTIPVDYSIVGACINEPSTTTHPYKVIYDSSSGGSDTFSIVTGTTNNISPGNIASTITVSAGSYDVWIRHPYALGVFPDATNFEWDIGAAIPADTDTDGYVLIATISSTTVTQLVTGSLWGDRLKTGTDTARYYYAQV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1005188

Overview

Ecosystem & Geography

Associated Families

Sequences