Scaffold Ga0209297_1002502

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1002502
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10131
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (96.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015970	Metagenome / Metatranscriptome	250	Y
F022157	Metagenome	215	Y
F030692	Metagenome	184	N
F042184	Metagenome	158	Y
F061577	Metagenome	131	N
F088497	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100250212	F061577	N/A	MPRPKTEMTKSGKTIAVRATLNEWNEFKRLGGTKWLRQFLAESIEKQKKPV
Ga0209297_100250213	F042184	AGG	MEFDIDFCDLELDIKTWVEWEYDPEYAPEDGVYDKYIWTAYLEVGYTRIDITDQLSAKECKSIEKKIEESIDDSL
Ga0209297_100250214	F015970	AGGAG	MTAFNKAKWEAYQWLNDDDIMDAIQGSVAIPLAIKSGDWEYAFQFIKERIDNKMQRRAEFYLYSMTKTASINDDDELRTLRTLWLKNEYRGEKDET
Ga0209297_100250223	F022157	GGAGG	MWDVLVTFMLMLFGAFVVVVFGAILIWTLYLLQNEADND
Ga0209297_10025024	F088497	GAGG	MSEKLEWEALWNAMEANPTEWIPTTEAMYWEMLEVVPPRSQKKSAFLVGEADYDNAEGYPVYSAFKRVGDNFYAKSMTFEQFTSEFVA
Ga0209297_10025026	F030692	GGAGG	MSEVEEKKGVVIKFDPVEYEALRGIGDGNISEGFRVCLRWAVHFHSIGLRSDDDLNYIGLCTVAD