Basic Information | |
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Taxon OID | 3300027733 Open in IMG/M |
Scaffold ID | Ga0209297_1002435 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10296 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (91.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F050379 | Metagenome | 145 | Y |
F058938 | Metagenome | 134 | Y |
F099169 | Metagenome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209297_100243511 | F050379 | AGGA | MTDEQLQKIANDLIAQYKHEIVRDGDWWHGIPDYSFNIHSPDDNDWFQINVYKVDPVKGMDDYEWSIDLEPVFLGETT |
Ga0209297_10024353 | F099169 | GGAG | MTHPTIAEALAPFRPLTYTEHYYVDLGYRHELGKAEEYEYKRAQAEGQEARRLLNRGALEAMQRAY |
Ga0209297_10024355 | F058938 | AGG | MTHYDRTRVTFHRGNAFTPEGIEAEPFATLTVNDLVERDLIDAICGLIRDHVNKTHMDFCNIKLTTEDWDV |
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