NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1002435

Scaffold Ga0209297_1002435


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1002435 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10296
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050379Metagenome145Y
F058938Metagenome134Y
F099169Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100243511F050379AGGAMTDEQLQKIANDLIAQYKHEIVRDGDWWHGIPDYSFNIHSPDDNDWFQINVYKVDPVKGMDDYEWSIDLEPVFLGETT
Ga0209297_10024353F099169GGAGMTHPTIAEALAPFRPLTYTEHYYVDLGYRHELGKAEEYEYKRAQAEGQEARRLLNRGALEAMQRAY
Ga0209297_10024355F058938AGGMTHYDRTRVTFHRGNAFTPEGIEAEPFATLTVNDLVERDLIDAICGLIRDHVNKTHMDFCNIKLTTEDWDV

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