Scaffold Ga0209297_1001621

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1001621
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12995
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013082	Metagenome	274	Y
F018712	Metagenome / Metatranscriptome	233	Y
F050330	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100162131	F050330	AGGA	MANETTSTSLSKLYTNKTKVKGTYRVYKPKPLKQPKKK
Ga0209297_100162134	F018712	AGGA	MCERKKPKMLDRKMRGTHDLEVRLYDLMKEKELNKEEIQRLNLIIKKLEEDLEKHLRSNN
Ga0209297_10016215	F013082	GGAG	MKTVQQEINRLLLESKTNKHIVSNEAGYYYDLCSVENKDITLDEFYKLFPYHNPDYNSDYWKQQHNRWKEIWNEAN