Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1001500 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1001500 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13559
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (71.43%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13559

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (71.43%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F006844	Metagenome / Metatranscriptome	363	Y
F011077	Metagenome / Metatranscriptome	295	Y
F017788	Metagenome / Metatranscriptome	238	Y
F019320	Metagenome / Metatranscriptome	230	N
F019826	Metagenome / Metatranscriptome	227	N
F037701	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100150010	F017788	AGGA	MKKIIITSLLIALLIPSASAQAATKSLNTKGNKASCKNIKEKYKSEAMSKWSNGLASDQDVLEEIDLNIKMLTERQKPTNGKIKSVVGTWIEAEKNTKNALENKNVKELTAAMNAKIKIITEFQKLCKLGI
Ga0209297_100150014	F037701	GGAG	MIKSKEWRVSNRVWVSVGFAPRRIGVGFHVDRFCANIDFLWFWVTLEY
Ga0209297_100150015	F011077	AGG	MDTNLTWAEEDVNLWKGWTYSPEKNRYYFNDIGNESLAAFWADEFLNQAYSQNGETYD
Ga0209297_100150019	F019826	N/A	MGFMRRSIRLGISKEEKVAGRITTLLSDFTLDLEAIGFYLAKGTPHIIYTRANEVLEAMQYNKEVDQLDRGVYNGRR
Ga0209297_100150021	F006844	AGGAG	MARWEVEVIFEPTGDYMNFEYETDNEDEDSIFNEITNQLSIVPFLIEKNEEE
Ga0209297_100150024	F019320	GAG	MHTLHWIATKAKDRQEAFDIVTVSLMPNEDGNRMADWSDWHVVGGGRWSDSAYQNSSDMIISYAEKPDEFKKTIEDIKRYRINYMNDKLIKLDNAFDNLKSDVVDYISNDCKLDDKRQFDFSRWEITEAIDMINSKWTCDSAFFDHNEFTSSFQYLEERLDKPEEAALHYLVPVDFHF
Ga0209297_10015007	F004475	GAGG	MTNWTEELNDKQKEDVWNFVVFTVKEIREQIAKDIEATIPLWKSRGFLKSRRTQRAFEASAAIARGQNEQIDG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1001500

Overview

Ecosystem & Geography

Associated Families

Sequences