Scaffold Ga0209297_1000739

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000739
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20036
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007517	Metagenome	349	Y
F056318	Metagenome	137	Y
F067414	Metagenome	125	Y
F069823	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100073914	F069823	GGAG	MYTAQIDRHGNIIVCKGDTERNGYRIFYTGTYNECLNRKVAA
Ga0209297_100073923	F067414	GGAGG	MTDQERIVYLRAALNSLVLSADRYIDDGSWIEHLTLDIEFAKGILKSTRLNKESKNGTND
Ga0209297_100073926	F056318	GGAGG	MFKHITPHPWTAHSATVWGYENEHGQPQVGSCVNKNLPVATQRANARLIAIAPQMYEIILKMHGNEQAQALVRYMEKSDESQTTE
Ga0209297_10007399	F007517	AGAAGG	MKLLDILHAKLEDQLQPLRRAVSDGGAKSYDHYKELCGTIRGLETAQLEIKDLVRKLKESDDDPI