Scaffold Ga0209297_1000564

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000564
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23317
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (71.74%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000980	Metagenome / Metatranscriptome	814	Y
F001562	Metagenome / Metatranscriptome	670	Y
F002245	Metagenome / Metatranscriptome	578	Y
F003379	Metagenome / Metatranscriptome	490	Y
F003690	Metagenome / Metatranscriptome	473	Y
F004051	Metagenome / Metatranscriptome	455	Y
F006744	Metagenome / Metatranscriptome	365	Y
F017995	Metagenome / Metatranscriptome	237	Y
F051930	Metagenome / Metatranscriptome	143	Y
F076101	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100056410	F051930	AGGAG	MRIQYVSTYISMSGEGLVEKLLCPVDQSILFSNQDLEDNIYLYCLECKYKKNIGTSTYENIVRAVNSVNKK
Ga0209297_100056420	F003379	AGGA	MKKIWAGISTIAIAILSGVALSKFLNWAGNQESIFDFDLDEDIDNENF
Ga0209297_100056425	F003690	GGTGG	MIPTGFELSITNEYGFEFDSFLGAIYLPWHTIILTTLAVIAYKIYKRKRAK
Ga0209297_100056427	F001562	GGGGG	MSKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFSIGLIEHEDYLAELEEE
Ga0209297_100056428	F006744	AGAAGG	MNLDEFKAHIIATRQASKAEALSVLSAKMSITTTTKEGATNGN
Ga0209297_100056431	F017995	GGAG	MSKMKEYIEIIAANCDECGGAGFLFFGDERNYDVEPCACVDEIADELTVDWVNE
Ga0209297_100056433	F076101	N/A	LFQTLIVLNGKRLLMYKITLAYDGNAPHWQGDYYDEMEAWSAFFKFTDWGFADEFSTVNIYTPELKCYTKNFYRSGMVVAK
Ga0209297_100056437	F002245	AGG	MSNLMKVPHTVEFEAIIDLDKIPANLLPAILALDTYSVTKMCKEATLHAIGMSNVLPLANDNNTWAEITVKEGN
Ga0209297_100056440	F004051	N/A	MLYYPLTKKRGKMTIEGKLYQVGDLFTTLKSKRTGVIKEIHPQASGSVRVLLELPSKETRWTSVSAKTLLG
Ga0209297_100056445	F000980	N/A	MTHYQKYTWVCTGDCDALIEYTIKDGYGWPAGEMNLTCRCNSNCTLVSVEDATIPYTDTPLQTKEEPMEESTVTTTPIPESYNSNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNGRQAQKHNNVLNGKIDAAKEIICEAYADSQDQDTLREIAEALGIELIKEVLFTATLEVSGTYTYNILDSDYELDLDSEVTDALYADSNNGNITIDDTEVCHVREA
Ga0209297_100056446	F000311	GAG	MYFELTAPDRLSMEMAYWDAQVIGLDPTALSPLTFNIGTGSIEKVSRIRDKYNLVESYTSDYEP