Scaffold Ga0209297_1000355

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000355
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29915
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003265	Metagenome / Metatranscriptome	496	Y
F005117	Metagenome	411	Y
F016520	Metagenome	246	Y
F032632	Metagenome	179	Y
F040586	Metagenome	161	N
F041187	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100035520	F032632	N/A	MKHSKYFHYPEVKNAKLNARGEAVIDLLTVLAIGVGMAVLLVAWWSA
Ga0209297_100035521	F016520	GGTGG	MKPTPVCPSGLTQYECEVEGVDLVCFLEYTPDEEGSRDSYGLLNEPGTSENLELVNAYVKGTDVDIGHLLLQYLVDHITTTALEDFKNDDY
Ga0209297_100035529	F040586	GGA	MMIFQELGGIDWLRKQLDKNAKMPAKYYRREMDAPSKKEIND
Ga0209297_100035531	F041187	AGGAG	MTNRPDFSTWNQANLVKFAGEAYTKLCEQDDMIQHLQCDLKTAIEAYRTLSKQMPESPPY
Ga0209297_100035535	F005117	GAGG	VKVSYDKWYPVVQPMAMVQQEAFIKKVEKQNAEHALQVQIDNTVKKFHQYEYEIYEFRMRQITLNIQIANFKRDIDLLV
Ga0209297_100035536	F003265	AGG	MRPLFFLLLLLLSGATAKESCIVSDFYGLSWLGNPSERHQRLSEWLTINGSSCSSEQLAGIWNSLAMWAGVADSSELRSKVLYYYAKAVERERK