Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1000253 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1000253 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36108
Total Scaffold Genes	58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	53 (91.38%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

36108

Total Scaffold Genes

58 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

53 (91.38%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002540	Metagenome / Metatranscriptome	550	Y
F003377	Metagenome / Metatranscriptome	490	Y
F015583	Metagenome / Metatranscriptome	253	Y
F039989	Metagenome	162	Y
F047642	Metagenome	149	Y
F053254	Metagenome / Metatranscriptome	141	Y
F102622	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100025316	F015583	AGGAGG	MRFVLILAALAFSSVANADTTVVARRGSVISAQDHAVVIARRGSLVHSSCGQYEGIGTGSTPEQARRNCCFFGKRVIVEEGVAYSPVARRWFAVIRYR
Ga0209297_100025328	F047642	AGGAG	MITNPTSPNENEYLAAVAGLSEHTVSPRTRVTYAIGDFVSGCTAGKRWQGRIWNVDGDRLSIEIDGGWLAVSANDVTH
Ga0209297_100025329	F102622	AGGAGG	MTRRWNAALQSLVLVRLGQELGTDSSLAQTVAHAIDFAVGTLARFLP
Ga0209297_10002534	F003377	GGAGG	VTDQAKETFYSIMERWGFPTLVAIACGWVLRADVLLPLVEEHRAFVKSLSETQREISKAVSEQTRLLYALQPRAAEQQEN
Ga0209297_100025346	F053254	AGGAG	MATDSQGNNFVFSGATYTVTSVTVTPGGDLLDNSHLGLASASNRTYQAPALKDDEISCEAFGSNSLVIGTSGALNFGSVAYTATVSSTSIAYSVGELVKLSVTFKVKS
Ga0209297_10002536	F039989	GAGG	VRFLICLVVVLIGCVATLPDDHGVSADMACETARMVTQLRHEIAPTPASDKCDNCDGTGKIGDGRIVLECPACKGTGKK
Ga0209297_10002539	F002540	AGGAGG	MPAYEATPAELEQYGANLNIWQQIALLQAWSPLIGYGQRLVNESDPYKKSLIVAEAAEWLASKTDAKLDDQLVKLLGDIVRAPQGEALVRWALLQVEAVR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1000253

Overview

Ecosystem & Geography

Associated Families

Sequences