Scaffold Ga0209297_1000243

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000243
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37168
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (82.76%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002986	Metagenome / Metatranscriptome	515	Y
F009516	Metagenome	316	Y
F014495	Metagenome / Metatranscriptome	262	Y
F015592	Metagenome / Metatranscriptome	253	Y
F029429	Metagenome / Metatranscriptome	188	Y
F063699	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100024311	F009516	AGGA	MSRPMIYPMGTMEVGDVATMPATDSTLIKRTSRNCSQYGIRNGQSYKCRTDVVKGLTFITRLG
Ga0209297_100024312	F014495	GAGG	MIKVAQIAPMGRKYRISSDSASVWPLRGLDGKTWAERRAEQEKESNK
Ga0209297_100024322	F063699	GAG	VAKHHNIKAYEIANEAGITRVTLSNWKNKRSEPMLGAYLAAFHALERIIAAKAVD
Ga0209297_100024329	F029429	AGG	MTPAKLKLARVAMGYSVTEMADALRLSPDNGATSIRKMESGKVRISGPIMVAVDAMLKGYDPFGDDYEDEGGQY
Ga0209297_10002434	F002986	GAG	MNTIDATQAQLNTHEEVCAFRYESICARMKRLESIGMGACGTIIMLLIGILLSILLKGVT
Ga0209297_10002437	F015592	N/A	MKFLMLLLGVLNKLLGAWGEYRWKQQGHQEAIKEVNDEINRQIELGEAAIIIPDPERTERLRDRFDRSRK