Scaffold Ga0209297_1000023

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000023
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 169326
• Total Scaffold Genes: 264
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 203 (76.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F021767	Metagenome / Metatranscriptome	217	N
F050890	Metagenome	144	Y
F068426	Metagenome	124	Y
F083677	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_1000023138	F068426	GAGG	MNTWQFVVSELKSLQQGFNDDQAIAELFVEQKLLRGYNITKSKDQVYHA
Ga0209297_1000023139	F006060	AGGAG	MLKFEGIAKVGDIIRAYDFKPMAGRDDAFIEGVVIDANSNESGFSSYKIKVTVDKFKKYETKVSARNRVEQIAFVPHQTSFMEFDFRVINLSE
Ga0209297_1000023144	F083677	GAGG	MSGNHFDGMSVDELQSYFSDFYKDYYGFRPRFATPEQWINREWLIQSINGIHDAFDAMKKTASGREQLRAEGWQIDESEFV
Ga0209297_1000023145	F050890	GAG	MSYDSDFERVYMVEFQSGRVIHIGQYTVQDVLEYCADEHEGEVIKSIYEEVYSKWEE
Ga0209297_100002385	F021767	AGGA	MELEQIKEKMSAGEAKGALIEKVTFAVLPIMFACVVYLMNALSSVNHQLTILESKMQLVVTSDNKQAPNMGAELAREKLRQDFMQQNTEALARSGANKAVLDTLVWRVQELEKHKEKQTANVGKK