Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1000010 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1000010 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	230993
Total Scaffold Genes	240 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	144 (60.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

230993

Total Scaffold Genes

240 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

144 (60.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021106	Metagenome	220	Y
F060911	Metagenome	132	Y
F073562	Metagenome	120	N
F074569	Metagenome / Metatranscriptome	119	Y
F093879	Metagenome	106	N
F102821	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_1000010111	F102821	N/A	MIVKFANKIGQLHGKFFMWLGHKAETNPWWAVALTVWALYEIGEHIAGPVMAVLYATGHLSFV
Ga0209297_1000010127	F021106	AGG	MSGWNIITQIRSIEQRADLLGMKLAPYKHDARYGDNVALIPKDNDALPIYTRDAVLFAGSLEGAGQWMQGVLWAREYDRMNTDRNLDKKRERKEQDERNIQMVRILKEEKLSLVPND
Ga0209297_1000010133	F093879	N/A	MTHPLVGRSYTFEDGNRMEIIQVREQDEHRGGASVTYLAYQGPGIPQKLVLNLEQFIDIYGQLFE
Ga0209297_1000010149	F074569	AGG	MKEQLLALAYEQEDEFGSSDRDEFDCLIALIEDGTINTFEELAKYGVEK
Ga0209297_1000010185	F073562	GAGG	VATKIEREFAFQAAVHFEGYFLMTVYELSLGMEVDTASIKEQNIAMDRITYFLTECLENSVFVEHTDKKAIEKYLQADIKVCTLPEEPYDQIITILLLLKLNAITEGKLHVNTISLRSGLSDDVKFIYDIDTASNHPFGNKSWWSECSTVMSDVAKTNKKEKIVKLIKQHCDWASVGLDWEQKEYKTTEIIFQDKQP
Ga0209297_100001081	F060911	GGA	MIEPKEYRDLESLMKVNKHLGIALSELTNTHSYVGVLTEQRRLIKVKLRLETIIEQTLKAEKIAKDKFFRKLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1000010

Overview

Ecosystem & Geography

Associated Families

Sequences