Scaffold Ga0247833

Overview

Basic Information
Taxon OID	3300027730 Open in IMG/M
Scaffold ID	Ga0247833_1005955 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Restricted
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components
Scaffold Length (bps)	13865
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (85.71%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location Name	Spain: Castile-La Mancha
Coordinates	Lat. (^o)	39.9879	Long. (^o)	-1.8737	Alt. (m)	Depth (m)	8
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002502	Metagenome / Metatranscriptome	553	Y
F021020	Metagenome / Metatranscriptome	221	Y
F029774	Metagenome / Metatranscriptome	187	Y
F042350	Metagenome / Metatranscriptome	158	Y
F062573	Metagenome / Metatranscriptome	130	Y
F085376	Metagenome	111	Y
F090460	Metagenome / Metatranscriptome	108	Y
F099390	Metagenome / Metatranscriptome	103	N

Family

Category

Number of Sequences

3D Structure?

F002502