NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F090460

Metagenome / Metatranscriptome Family F090460

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F090460
Family Type Metagenome / Metatranscriptome
Number of Sequences 108
Average Sequence Length 47 residues
Representative Sequence MVNDKFSDKEYWEGIRDACEYFKDELGFEDATDTSLYQQATEELALV
Number of Associated Samples 69
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 85.19 %
% of genes near scaffold ends (potentially truncated) 23.15 %
% of genes from short scaffolds (< 2000 bps) 75.93 %
Associated GOLD sequencing projects 59
AlphaFold2 3D model prediction Yes
3D model pTM-score0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (66.667 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(19.444 % of family members)
Environment Ontology (ENVO) Unclassified
(31.481 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(60.185 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 50.67%    β-sheet: 0.00%    Coil/Unstructured: 49.33%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.68
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF06067DUF932 11.11
PF00383dCMP_cyt_deam_1 0.93
PF01391Collagen 0.93



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A66.67 %
All OrganismsrootAll Organisms33.33 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2222084010|2225744358Not Available15180Open in IMG/M
2222084010|2225746263Not Available5408Open in IMG/M
2222084010|2225746846All Organisms → Viruses → Predicted Viral1496Open in IMG/M
3300001336|ML7_10116997Not Available992Open in IMG/M
3300001336|ML7_10120444Not Available967Open in IMG/M
3300001336|ML7_10129740Not Available907Open in IMG/M
3300003409|JGI26088J50261_1013911All Organisms → Viruses → Predicted Viral2431Open in IMG/M
3300003409|JGI26088J50261_1026644All Organisms → Viruses → Predicted Viral1320Open in IMG/M
3300003410|JGI26086J50260_1056362Not Available882Open in IMG/M
3300003410|JGI26086J50260_1072281Not Available734Open in IMG/M
3300003410|JGI26086J50260_1104590Not Available564Open in IMG/M
3300003908|JGI26085J52751_1036969Not Available664Open in IMG/M
3300005512|Ga0074648_1000897Not Available34393Open in IMG/M
3300006025|Ga0075474_10149551Not Available734Open in IMG/M
3300006025|Ga0075474_10196639Not Available619Open in IMG/M
3300006025|Ga0075474_10216431Not Available583Open in IMG/M
3300006026|Ga0075478_10135575Not Available773Open in IMG/M
3300006357|Ga0075502_1685879Not Available1089Open in IMG/M
3300006400|Ga0075503_1674284All Organisms → Viruses → Predicted Viral2244Open in IMG/M
3300006802|Ga0070749_10090232All Organisms → Viruses → Predicted Viral1820Open in IMG/M
3300006867|Ga0075476_10104715Not Available1086Open in IMG/M
3300006870|Ga0075479_10209323Not Available781Open in IMG/M
3300006870|Ga0075479_10288224Not Available645Open in IMG/M
3300006874|Ga0075475_10451251Not Available512Open in IMG/M
3300006919|Ga0070746_10264811Not Available798Open in IMG/M
3300006919|Ga0070746_10520570Not Available520Open in IMG/M
3300007236|Ga0075463_10183977Not Available673Open in IMG/M
3300007609|Ga0102945_1004557All Organisms → Viruses → Predicted Viral3631Open in IMG/M
3300007609|Ga0102945_1014406Not Available1823Open in IMG/M
3300007609|Ga0102945_1033784Not Available1059Open in IMG/M
3300007609|Ga0102945_1036237Not Available1012Open in IMG/M
3300007609|Ga0102945_1040617Not Available940Open in IMG/M
3300007609|Ga0102945_1044111Not Available889Open in IMG/M
3300007609|Ga0102945_1086756Not Available572Open in IMG/M
3300009000|Ga0102960_1099832All Organisms → Viruses → Predicted Viral1057Open in IMG/M
3300009000|Ga0102960_1210830Not Available692Open in IMG/M
3300009001|Ga0102963_1164888Not Available890Open in IMG/M
3300009001|Ga0102963_1247944Not Available705Open in IMG/M
3300009124|Ga0118687_10106785Not Available974Open in IMG/M
3300009124|Ga0118687_10333530Not Available576Open in IMG/M
3300009450|Ga0127391_1008777All Organisms → Viruses → Predicted Viral2174Open in IMG/M
3300009504|Ga0114946_10680208Not Available517Open in IMG/M
3300010368|Ga0129324_10029486All Organisms → Viruses → Predicted Viral2634Open in IMG/M
3300010389|Ga0136549_10007820Not Available7437Open in IMG/M
3300010389|Ga0136549_10040877All Organisms → Viruses → Predicted Viral2486Open in IMG/M
3300010389|Ga0136549_10099574All Organisms → Viruses → Predicted Viral1373Open in IMG/M
3300013941|Ga0117792_1010538Not Available1123Open in IMG/M
3300014042|Ga0117790_1011562All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2565Open in IMG/M
3300014042|Ga0117790_1030766Not Available1088Open in IMG/M
3300014042|Ga0117790_1059423Not Available639Open in IMG/M
3300017824|Ga0181552_10139186All Organisms → Viruses → Predicted Viral1304Open in IMG/M
3300017950|Ga0181607_10145822All Organisms → Viruses → Predicted Viral1442Open in IMG/M
3300017950|Ga0181607_10277302All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage951Open in IMG/M
3300017951|Ga0181577_10929736Not Available516Open in IMG/M
3300017967|Ga0181590_10690771Not Available689Open in IMG/M
3300017968|Ga0181587_10883305Not Available554Open in IMG/M
3300017987|Ga0180431_11001519Not Available550Open in IMG/M
3300017991|Ga0180434_11240085Not Available558Open in IMG/M
3300018036|Ga0181600_10226749Not Available979Open in IMG/M
3300018041|Ga0181601_10458836Not Available671Open in IMG/M
3300018048|Ga0181606_10380489Not Available759Open in IMG/M
3300018417|Ga0181558_10041838All Organisms → Viruses → Predicted Viral3164Open in IMG/M
3300018421|Ga0181592_10885845Not Available582Open in IMG/M
3300019765|Ga0194024_1005056Not Available2708Open in IMG/M
3300019765|Ga0194024_1009637All Organisms → Viruses → Predicted Viral2012Open in IMG/M
3300020048|Ga0207193_1471935Not Available832Open in IMG/M
3300020053|Ga0181595_10420041Not Available513Open in IMG/M
3300020178|Ga0181599_1364194Not Available511Open in IMG/M
3300020601|Ga0181557_1109993All Organisms → Viruses → Predicted Viral1241Open in IMG/M
3300021356|Ga0213858_10043832All Organisms → Viruses → Predicted Viral2160Open in IMG/M
3300021371|Ga0213863_10022365All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3609Open in IMG/M
3300021375|Ga0213869_10348531Not Available619Open in IMG/M
3300021389|Ga0213868_10188978Not Available1243Open in IMG/M
3300021425|Ga0213866_10135786All Organisms → Viruses → Predicted Viral1314Open in IMG/M
3300021425|Ga0213866_10533304Not Available555Open in IMG/M
3300021960|Ga0222715_10131433All Organisms → Viruses → Predicted Viral1576Open in IMG/M
3300021964|Ga0222719_10023622All Organisms → Viruses → Predicted Viral4888Open in IMG/M
3300021964|Ga0222719_10025357All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4699Open in IMG/M
3300021964|Ga0222719_10218186All Organisms → Viruses → Predicted Viral1291Open in IMG/M
3300021964|Ga0222719_10419450Not Available827Open in IMG/M
3300022053|Ga0212030_1010217All Organisms → Viruses → Predicted Viral1157Open in IMG/M
3300022169|Ga0196903_1001145All Organisms → Viruses → Predicted Viral3825Open in IMG/M
3300022921|Ga0255765_1350281Not Available563Open in IMG/M
3300022926|Ga0255753_1293912Not Available632Open in IMG/M
3300023176|Ga0255772_10170240All Organisms → Viruses → Predicted Viral1271Open in IMG/M
3300024306|Ga0255148_1027932All Organisms → Viruses → Predicted Viral1056Open in IMG/M
3300025608|Ga0209654_1011320All Organisms → Viruses → Predicted Viral3819Open in IMG/M
3300025608|Ga0209654_1056065Not Available1197Open in IMG/M
3300025608|Ga0209654_1082342Not Available902Open in IMG/M
3300025617|Ga0209138_1027083All Organisms → Viruses → Predicted Viral2426Open in IMG/M
3300025617|Ga0209138_1032577All Organisms → Viruses → Predicted Viral2097Open in IMG/M
3300025653|Ga0208428_1143667Not Available643Open in IMG/M
3300025671|Ga0208898_1104961Not Available850Open in IMG/M
3300025751|Ga0208150_1082644Not Available1063Open in IMG/M
3300025771|Ga0208427_1274266Not Available511Open in IMG/M
3300025879|Ga0209555_10388059Not Available513Open in IMG/M
3300025889|Ga0208644_1270469All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage692Open in IMG/M
3300026097|Ga0209953_1001716Not Available6478Open in IMG/M
3300026097|Ga0209953_1001970All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5856Open in IMG/M
3300026097|Ga0209953_1007256Not Available2437Open in IMG/M
3300026097|Ga0209953_1012681Not Available1659Open in IMG/M
3300026097|Ga0209953_1023703Not Available1041Open in IMG/M
3300026097|Ga0209953_1025314Not Available993Open in IMG/M
3300026187|Ga0209929_1052121All Organisms → Viruses → Predicted Viral1157Open in IMG/M
3300027541|Ga0255158_1082439Not Available708Open in IMG/M
(restricted) 3300027730|Ga0247833_1005955Not Available13865Open in IMG/M
3300027917|Ga0209536_100616697All Organisms → Viruses → Predicted Viral1350Open in IMG/M
3300027917|Ga0209536_102610042Not Available593Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous19.44%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water16.67%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh15.74%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine11.11%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater5.56%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water4.63%
Epidermal MucusHost-Associated → Fish → Skin → Epidermal Mucus → Unclassified → Epidermal Mucus3.70%
Benthic LakeEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Benthic Lake2.78%
Coastal LagoonEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Coastal Lagoon2.78%
Marine Methane Seep SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment2.78%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater1.85%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater1.85%
Marine SedimentEnvironmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment1.85%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment1.85%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment1.85%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment0.93%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater0.93%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment0.93%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.93%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment0.93%
Meromictic PondEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond0.93%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2222084010Coastal lagoon microbial communities from Mar Menor, Spain - Sample 1EnvironmentalOpen in IMG/M
3300001336ML7EnvironmentalOpen in IMG/M
3300003409Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNAEnvironmentalOpen in IMG/M
3300003410Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNAEnvironmentalOpen in IMG/M
3300003908Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_DNAEnvironmentalOpen in IMG/M
3300005512Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_waterEnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006357Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006400Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006867Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300006870Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006874Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300007236Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNAEnvironmentalOpen in IMG/M
3300007609Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MGEnvironmentalOpen in IMG/M
3300009000Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MGEnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009124Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsfEnvironmentalOpen in IMG/M
3300009450Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 4m depth; DNA IDBA-UDEnvironmentalOpen in IMG/M
3300009504Lake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep SedimentEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010389Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsfEnvironmentalOpen in IMG/M
3300013941Epidermal mucus viral and microbial communities from European eel in Spain - water from Alfacada pond (Ebro delta)Host-AssociatedOpen in IMG/M
3300014042Epidermal mucus viral and microbial communities from European eel in Spain - Ebro delta (0.22 um filter)Host-AssociatedOpen in IMG/M
3300017824Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017950Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017967Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017968Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017987Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaGEnvironmentalOpen in IMG/M
3300017991Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaGEnvironmentalOpen in IMG/M
3300018036Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018041Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018048Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018417Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018421Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019765Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MGEnvironmentalOpen in IMG/M
3300020048Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915EnvironmentalOpen in IMG/M
3300020053Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041401AS metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020178Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041405US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020601Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011506CT metaG (spades assembly)EnvironmentalOpen in IMG/M
3300021356Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300021389Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127EnvironmentalOpen in IMG/M
3300021425Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284EnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022053Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022169Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022921Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaGEnvironmentalOpen in IMG/M
3300022926Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaGEnvironmentalOpen in IMG/M
3300023176Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaGEnvironmentalOpen in IMG/M
3300024306Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8hEnvironmentalOpen in IMG/M
3300025608Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025617Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025653Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025671Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)EnvironmentalOpen in IMG/M
3300025751Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025771Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025879Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_85LU_5_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300026097Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300026187Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300027541Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepC_8hEnvironmentalOpen in IMG/M
3300027730 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8mEnvironmentalOpen in IMG/M
3300027917Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
22251377312222084010Coastal LagoonMINDKMDDKEYWEGIRDACEYFKDELGIEDATHTTLYEQAEAELALV
22251423972222084010Coastal LagoonMINDKMDDKEYWEGIRDACEYFVALGVEDAMNCDIAVMAEKELALV
22251439252222084010Coastal LagoonYQVRNKMINDKMDDKEYWEGIRDACEYFKDELGIEDATHTTLYEQAEAELALV
ML7_1011699733300001336Benthic LakeMVNDKFSDKEYWEGVRDACEYFRDELGIEDAMDTSLAIQAEEELELV*
ML7_1012044433300001336Benthic LakeVVNDKFSDKEYWEGVQYACEYFRDELGFEDATETTLYQQATEELALV*
ML7_1012974033300001336Benthic LakeMVNDKFNDKEYWEGVRDACEYFRDELGIEDAMDTSLAIQAEKELELV*
JGI26088J50261_101391153300003409MarineMINNKFSDKEYWEGIRDACEYFQNELGFEDATYTSLYQQATEELALV*
JGI26088J50261_102664433300003409MarineLLLILLVRCGAADMINDKFSDKEYWEGVQYACEYFRDELGFEDATYTSLYEQATEELSVVGGSV*
JGI26086J50260_105636213300003410MarineLILLVRCGAADMINNKFSDKEYWEGIRDACEYFQNELGFEDATYTSLYQQATEELALV*
JGI26086J50260_107228113300003410MarineMINNKFSDKEYWEGIRDACEYFEDELGIEDATDTSLYQQATKELALV*
JGI26086J50260_110459023300003410MarineMINDKFSDKEYWEGVQYACEYFRDELGFEDATYTSLYEQATEELSVVGGSV*
JGI26085J52751_103696923300003908MarineMVNDKFSDKEYWEGIRDACEYFQDELGIEDATDTSLYQHATKELALV*
Ga0074648_1000897453300005512Saline Water And SedimentVVNDKFSDKEYWEGIRDACEYFQDELGIEDATHTTLYQQAQEELALV*
Ga0075474_1014955143300006025AqueousMVNDKFSDKEYWEGIRDACEYFQNELGIEDATDTTLYQQATQELELV*
Ga0075474_1019663923300006025AqueousMVNDKFSDKEYWEGIQYACEYFRDELGFEDATETSLYQQATEELALV*
Ga0075474_1021643113300006025AqueousGVLMVNDKFSDKEYWEGIQYACEYFRDELGFEDATETTLYQQATEELALV*
Ga0075478_1013557533300006026AqueousMVNDKFSDKEYWEGIQYACEYFRDELGFEDATETTLYQQAAEELALV*
Ga0075502_168587963300006357AqueousKEYWEGIQYACEYFRDELGFEDATETTLYQQATEELALV*
Ga0075503_167428473300006400AqueousMVNDKFSDKEYWEGIQYACEYFRDELGFEDATETTLYQQATEELALV*
Ga0070749_1009023273300006802AqueousMAINNKFADIEYWDGIRDACEYFKELGVEDAMDTSIAIQAVEELALVGA*
Ga0075476_1010471533300006867AqueousMINDKFSDKEYWQGVLETCEYFRDELGFEDATDTSLYQQATEELALV*
Ga0075479_1020932343300006870AqueousFSDKEYWEGIQYACEYFRDELGFEDATETTLYQQATEELALV*
Ga0075479_1028822413300006870AqueousMVNDKFSDKEYWEGVRDTCEYFKSELGFEDATDTSLYQQATEELALV*
Ga0075475_1045125113300006874AqueousRRAGVLMINDKFSDKEYWQGVLETCEYFRDELGFEDATDTSLYQQATEELALV*
Ga0070746_1026481143300006919AqueousMVNDKFSDKEYWEGIQYACEYFRDELGIEDATETTLYQQATEELSLV*
Ga0070746_1052057023300006919AqueousMMNNKINDIEYWEGIRDACEYFKELGVEDAMDTDIAIQAVEELALVGA*
Ga0075463_1018397733300007236AqueousMVNDKFSDKEYWEGIQYACEYFRDELGFEDATETSLYQRATEELALV*
Ga0102945_1004557103300007609Pond WaterMINDKMDDKEYWEGIRDACEYFKDELGIEDAQETTLYQMATQELKLVGV*
Ga0102945_101440643300007609Pond WaterMINDKMDDKEYWEGIRDACEYFVTLGVVDAMDTDIAIQAADELALVGA*
Ga0102945_103378443300007609Pond WaterMINDKMDDKEYWEGIRDACEYFVTLGVEDAMNCDIAVMAEKELALA*
Ga0102945_103623743300007609Pond WaterMVNDKFSDKEYWEGIRDACEYFKDELGFEDATDTTLYQQATQELALV*
Ga0102945_104061733300007609Pond WaterMVNDKFSDKEYWEGIRDACEYFKDELGFEDATYTSLYQQATEELALV*
Ga0102945_104411133300007609Pond WaterMINDKMDDKEYWEGIRDACEYFVTLGVVDAMNCDIAVMAEKELALV*
Ga0102945_108675623300007609Pond WaterVVNDKFSDKEYWEGIRDACEYFQNELGIEDATDTTLYQQATQELALV*
Ga0102960_109983213300009000Pond WaterFSDKEYWEGVRDTCEYFKSELGMEDATETSLYQQATDELALV*
Ga0102960_121083033300009000Pond WaterMVNDKFSDKEYWEGIRDACEYFKDELGFEDATDTTLYQQATQELELV*
Ga0102963_116488843300009001Pond WaterMVNDKFSDKEYWEGVRDTCEYFKSELGMEDATETSLYQQATDELALV*
Ga0102963_124794433300009001Pond WaterMVNDKFSDKEYWEGIRDACEYFKDELGIEDATDTTLYQQATQELELV*
Ga0118687_1010678513300009124SedimentMAINNKFSDIEYWEGIRDACEYFKELGVEDAMDTSIAIQAVEELALVGA*
Ga0118687_1033353033300009124SedimentMVNDKFSDKEYWEGVRDTCEYFKSELGFEDATETSLYQQATEELALV*
Ga0127391_100877763300009450Meromictic PondMINDKFSDKEYWQGVLETCEYFRDELGIEDATDTSLYQQATEELALV*
Ga0114946_1068020833300009504SedimentMVNDKFSDKEYWEGIYDACKYFRDELGFDDAMETDIAIQAQQELELI*
Ga0129324_1002948663300010368Freshwater To Marine Saline GradientSDKEYWEGIQYACEYFRDELGFEDATETTLYQQATEELALV*
Ga0136549_1000782073300010389Marine Methane Seep SedimentMINDKISDVEYWEGIRDACEYFKDELGIEDAMDTNIAIQAVQELALIGA*
Ga0136549_1004087783300010389Marine Methane Seep SedimentVVNDKFSDKEYWEGIRDACEYFKDELGIEDATDTTLYQQATQELELV*
Ga0136549_1009957443300010389Marine Methane Seep SedimentMVNDKFSDKEYWEGIRDACEYFKDELGIEDATHTTLYQQATQELELV*
Ga0117792_101053863300013941Epidermal MucusMVNDKFSDKEYWEGIRDACEYFQNELGFEDATDTTLYQQATEELELA*
Ga0117790_101156293300014042Epidermal MucusMVNDKFSDKEYWEGIRDACEYFQNELGFEDATDTTLYQQAQEELALV*
Ga0117790_103076633300014042Epidermal MucusMINDKFSDKEYWEGIRDACEYFKDELGFEDATDTTLYQQATQELALV*
Ga0117790_105942313300014042Epidermal MucusMVNDKFSDKEYWEGIRDACEYFKDELGIEDATDTTLYQQAKEELELV*
Ga0181552_1013918623300017824Salt MarshMVNDKFSDKEYWEGVRDTCEYFKSELGFEDATETSLYQQATEELALV
Ga0181607_1014582233300017950Salt MarshMMNNKINDIEYWEGIRDACEYFLSLGVEDAMDTSIAIQAVEELALVGA
Ga0181607_1027730233300017950Salt MarshMAINNKFSDIEYWEGIRDACEYFKELGVEDAMDTDIAVQAVEELALVGA
Ga0181577_1092973633300017951Salt MarshMMNNKINDIEYWEGIRDACEYFLSLGVEDAMDTSIAIQAVEELA
Ga0181590_1069077113300017967Salt MarshMMNNKINDIEYWEGIRDACEYFKELGAEDAMDTSIAIQAVEELALVGA
Ga0181587_1088330523300017968Salt MarshMINNKFADIEYWEGIRDACEYFKELGVEDAMDTSIAIQAVEELALVGA
Ga0180431_1100151923300017987Hypersaline Lake SedimentMINDKMDDKEYWEGIRDACEYFVTLGVVDAMDCDIAVMAQKELELV
Ga0180434_1124008523300017991Hypersaline Lake SedimentMINDKMDDKEYWEGIRDACEYFVTLGVEDAMDCDIAVMAQKELELV
Ga0181600_1022674943300018036Salt MarshMMNNKINDIEYWEGIRDACEYFKELGVEDAMDTSIAIQAVEELALVGA
Ga0181601_1045883633300018041Salt MarshMVNDKFSDKEYWEGVRDTCEYFKSELGFEDATETSVYQQATEELALV
Ga0181606_1038048933300018048Salt MarshMMNNKINDIEYWEGIRDACEYFLSIGVEDAMDTSIAIQAVEELALVGA
Ga0181558_1004183833300018417Salt MarshMVNDKFSDKEYWEGVRDTCENFKSELGFEDATETSLYQQATEELALV
Ga0181592_1088584523300018421Salt MarshMMNNKINDIEYWEGIRDACEYFKELGVEDAMDTDFAIQTVEELALVGA
Ga0194024_100505623300019765FreshwaterMINDKMDDKEYWEGIRDACEYFVTLGVEDAMDCDIAVMAQKELALV
Ga0194024_100963793300019765FreshwaterMVNDKFSDKEYWEGIQYACEYFRDELGFEDATETTLYQQATEELALV
Ga0207193_147193523300020048Freshwater Lake SedimentMVNDKFSDKEYWQGVLETCEYFRDELGIEDAMSTTLAEQAQQELELV
Ga0181595_1042004133300020053Salt MarshMMNNKINDIEYWEGIRDACEYFKELGVEDAMDTDIAVQAVEELALVG
Ga0181599_136419413300020178Salt MarshMVNDKFSDKEYWEGVRDTCEYFKSELGFEDATETSLYQQATEELAL
Ga0181557_110999343300020601Salt MarshRKAGVLMVNDKFSDKEYWEGVRDTCEYFKSELGFEDATETSLYQQATEELALV
Ga0213858_1004383273300021356SeawaterMINDKMDDKEYWEGIRDACEYFVTLGVEDAMNCDIAVMAQKELELV
Ga0213863_1002236573300021371SeawaterMVNDKFSDKEYWEGIQYACEYFRDELGFEDATETSLYQQATEELALV
Ga0213869_1034853113300021375SeawaterMVNDKFSDKEYWEGIQYACEYFRDELGFEDATETTLYQQAAEELALV
Ga0213868_1018897833300021389SeawaterMVNDKFSDKEYWEGIQYACEYFRDELGFEDATETTLYQQATEELSLV
Ga0213866_1013578613300021425SeawaterMVNDKFSDKEYWEGIRDACEYFQDELGIEDATHTTLYQQAQEELALV
Ga0213866_1053330423300021425SeawaterVVNDKFSDKEYWEGIRDACEYFQDELGIEDATHTTLYQQAQEELALV
Ga0222715_1013143343300021960Estuarine WaterMVNDKFSDKEYWEGIRDACEYFKDELGFEDATDTSLYQQATEELALV
Ga0222719_1002362273300021964Estuarine WaterMVNDKFSDKEYWEGIRDACEYFKDELGIEDATDTTLYQQATQELELV
Ga0222719_1002535783300021964Estuarine WaterMINDKFTDIEYWEGVRDTCEYFRDELGIEDATDTSLYQQATGELALV
Ga0222719_1021818613300021964Estuarine WaterMVNDKFSDKEYWEGIRDACEYFQNELGFEDATDTTLYQQATQELELV
Ga0222719_1041945043300021964Estuarine WaterMVNDKFSDKEYWEGIRDACEYFRDELGIEDAMDTNIAIQAEQELALV
Ga0212030_101021723300022053AqueousMINDKFSDKEYWQGVLESCEYFRDELGFEDATDTSLYQQATEELALV
Ga0196903_1001145113300022169AqueousMINDKFSDKEYWQGVLETCEYFRDELGFEDATDTSLYQQATEELALV
Ga0255765_135028133300022921Salt MarshMVNDKFSDKEYWEGVRDTCEYFKSELGFEDATETSLYQQATEEL
Ga0255753_129391213300022926Salt MarshMMNNKINDIEYWEGIRDACEYFKELGVEDAMDTDIAVQAVEELALVGA
Ga0255772_1017024013300023176Salt MarshMMNNKINDIEYWEGIRDACEYFKELGVEDAMDTDIAVQAVE
Ga0255148_102793253300024306FreshwaterKENKKSMVNDKFSDKEYWEGIRDACEYFRDELGIEDAMDTSIAIQAEQELELV
Ga0209654_101132073300025608MarineMINDKFSDKEYWEGVQYACEYFRDELGFEDATYTSLYEQATEELSVVGGSV
Ga0209654_105606533300025608MarineMINNKFSDKEYWEGIRDACEYFQNELGFEDATYTSLYQQATEELALV
Ga0209654_108234223300025608MarineMVNDKFSDKEYWEGIRDACEYFQDELGIEDATDTSLYQHATKELALV
Ga0209138_102708373300025617MarineMINNKFSDKEYWEGIRDACEYFEDELGIEDATDTSLYQQATKELALV
Ga0209138_103257723300025617MarineMINDKFADKEYWEGVRDTCEYFKSELGIEDAMDTMMGIQATKELAVG
Ga0208428_114366713300025653AqueousYWEGVRDTCEYFKSELGFEDATETSLYQQATEELALV
Ga0208898_110496143300025671AqueousMVNDKFSDKEYWEGIRDACEYFQNELGIEDATDTTLYQQATQELELV
Ga0208150_108264453300025751AqueousFSDKEYWEGIQYACEYFRDELGFEDATETTLYQQATEELALV
Ga0208427_127426623300025771AqueousESRTRFDWSIAMVNDKFSDKEYWEGIQYACEYFRDELGFEDATETTLYQQATEELALV
Ga0209555_1038805913300025879MarineMVNDKFSDKEYWEGIRDACEYFQNELGIEDATDTSLYQQATEELELV
Ga0208644_127046923300025889AqueousMAINNKFADIEYWEGIRDACEYFKELGVEDAMDTSIAIQAVEELALVGA
Ga0209953_100171683300026097Pond WaterMINDKMDDKEYWEGIRDACEYFVTLGVVDAMDTDIAIQAADELALVGA
Ga0209953_100197083300026097Pond WaterMVNDKFSDKEYWEGIRDACEYFKDELGFEDATYTSLYQQATEELALV
Ga0209953_100725693300026097Pond WaterMVNDKFSDKEYWEGIRDACEYFKDELGFEDATDTTLYQQATQELALV
Ga0209953_101268163300026097Pond WaterMINDKMDDKEYWEGIRDACEYFKDELGIEDAQETTLYQMATQELKLVGV
Ga0209953_102370343300026097Pond WaterMINDKMDDKEYWEGIRDACEYFVTLGVVDAMNCDIAVMAEKELALV
Ga0209953_102531443300026097Pond WaterMINDKMDDKEYWEGIRDACEYFVTLGVEDAMNCDIAVMAEKELALA
Ga0209929_105212113300026187Pond WaterMVNDKFSDKEYWEGVRDTCEYFKSELGMEDATETSLYQQATDELA
Ga0255158_108243913300027541FreshwaterFSDKEYWEGIRDACEYFRDELGIEDAMDTSIAIQAEQELELVXP
(restricted) Ga0247833_100595583300027730FreshwaterMVNDKFSDKEYWQGVLETCEYFRDELGIEDAMNTTLAAQAQQELGLV
Ga0209536_10061669723300027917Marine SedimentMVNDKFSDKEYWEGIQYACEYFRDELGIEDATETTLYQQATEELALV
Ga0209536_10261004213300027917Marine SedimentMINNKFSDVEYWEGIRDACEYFKELGVEDAMNTSIAIQAVEELALIGA


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