NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247833_1001344

Scaffold Ga0247833_1001344


Overview

Basic Information
Taxon OID3300027730 Open in IMG/M
Scaffold IDGa0247833_1001344 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)40186
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (75.76%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001094Metagenome / Metatranscriptome780Y
F007691Metagenome / Metatranscriptome346Y
F016784Metagenome / Metatranscriptome244Y
F026830Metagenome / Metatranscriptome196Y
F027417Metagenome194Y
F058947Metagenome134Y
F060700Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0247833_100134422F026830N/AMVKGETVMPVPGGEITTTEILVPEVVPVEETTEEEVNE
Ga0247833_100134429F016784N/ALLRVWGGVLMEFNTYDYVAPEFKDVIATGEYAAHYWFEQGWKACRLAFLLHDRANNDSN
Ga0247833_10013443F060700N/AMGEARVFFSYQLNPELIMKGLQMDKTLKELAAELNIDEKHFDRDFLMLDNRFAVMQDAKGLHLTDVFSWASFNPIKIGRKSNATIKGLQFQLGQYKVYIKQLQEAK
Ga0247833_100134432F001094N/AMKAIAVTYLRAGVASVLALFLAGVTDPKALLMAGVAAVAGPLLKAIDPNATEFGRGSK
Ga0247833_10013446F007691GGAGMDTLEQLINEIYEDNYSHLEFNDNMGGECDCHIHTTLNTIVKYRDKGESND
Ga0247833_10013447F058947GGAGMISCELQDLEDLMGKAGVLLTGNAYDKAQDYLQDSCSCATYNYLLGYKIGRE
Ga0247833_10013448F027417GGAGMSYDYRVTFVTDYLTITTNVCLEFDETTGNCSDEAYEQATISGVNNIVDELGHFDETLINDITVTLLLDEEEVELNER
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