Scaffold Ga0247836_1026999

Overview

Basic Information

• Taxon OID: 3300027728
• Scaffold ID: Ga0247836_1026999
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 3944
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006893	Metagenome	362	Y
F010917	Metagenome	297	Y
F019996	Metagenome / Metatranscriptome	226	Y
F050330	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247836_102699912	F006893	AGG	MANLTTESISESTKKILCDKKLYKDINFFAVPHNKVLLAVIRSITKKSFAQIGKDYKKSWFSIYASVKDCQKNGLRSFTNKVIDLVREDLK
Ga0247836_10269994	F019996	N/A	MMNKLEQHVKACSKCIVDLLCKRHNLKVKKQAPISINTKKYGKV
Ga0247836_10269996	F010917	N/A	MNLDKITFGSRIINLNLIDKEQASKKKIFGEFDCDSNTITLDKSLDNIQMSNTIIHEICHLIHDEYKLDLPAKAEELICNSIANGICHTLYQNQDLLDFLYKSLKKD
Ga0247836_10269998	F050330	N/A	MANETTSTSTAVLYTNRKAKGTYKVYKPKPLKMPRKKK