Scaffold Ga0247836_1017688

Overview

Basic Information

• Taxon OID: 3300027728
• Scaffold ID: Ga0247836_1017688
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 5596
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008752	Metagenome / Metatranscriptome	328	Y
F033426	Metagenome	177	Y
F033792	Metagenome / Metatranscriptome	176	Y
F073147	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247836_10176881	F033426	N/A	NSPKDPVLKKANDKAHKLLQKIEADYEKEDEAMMIRLIKARDSLWT
Ga0247836_10176882	F033792	GGA	MSISDNNPHCIEDLYAKYLQFTAVMLEDYKDIEIAGIMVTQALSMYRTVLPEEDYQRMVKSIYERRNEVKTFDGT
Ga0247836_10176883	F008752	N/A	MKEEMKSKPSTGPEPQTPAEGVLKRHSWGNAITYQVVCECHDADHDHNVWVEADDHRVTVTTYTTQKSKWWSLNRWQTIWILLTKGYVEHEANIIMTEQQALNYAEILKKAIQDVKNFKQ
Ga0247836_10176885	F073147	AGGAG	MNFELYEVWAVDEAGHEELVETTSSRKEALEIAEANLGLGVIEAIVYQEDENGDLHEIKRFGHG