NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247836_1007794

Scaffold Ga0247836_1007794


Overview

Basic Information
Taxon OID3300027728 Open in IMG/M
Scaffold IDGa0247836_1007794 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)11143
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (65.62%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Associated Families10

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004132Metagenome / Metatranscriptome451Y
F004475Metagenome / Metatranscriptome436Y
F006844Metagenome / Metatranscriptome363Y
F011077Metagenome / Metatranscriptome295Y
F019320Metagenome / Metatranscriptome230N
F019826Metagenome / Metatranscriptome227N
F020851Metagenome / Metatranscriptome221Y
F037701Metagenome / Metatranscriptome167Y
F068817Metagenome124Y
F098668Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0247836_100779410F037701AGGAMIKSKEWRVSNKVWVSAGFNPRRIALGFSVDRFNASIDFLWFWVTLEY
Ga0247836_100779411F011077GAGMITDNLTWAEEENNLWKGWTYSLEKNRYYFNDIGNESLAAFWADEFLNQAYL
Ga0247836_100779412F098668GGAMKNISNLISTSGAFNLDEALRAIAEIHIPEGTLVHRCQEDKKPWPCPTMKAIERELTK
Ga0247836_100779413F068817N/AMSDMDEFIKDPWKRFNEMRNTPHTCDYIYSIDPSGAMFFEMCKFCLDTQGIIEMDNK
Ga0247836_100779420F019826N/AMGFMRRSIRLGISKEEKVANRITTLLSDFTLNLEAIGFYLAKGSPYIIYSRANEVLEAMQYNKEVDELDRGVYYKTK
Ga0247836_100779423F006844AGGAGGMAKWEIEVIFEPTGDYMNFIYETDTEDEDAIFNEVANQLSIVPNLVEKNEEE
Ga0247836_100779426F019320GAGMHTLHWIATKAKDRQEAFDIVTVSLMPNEDGNRMADWSDWHVVGGGRWSDSAYQNSSDMIISYAEKPDEFKKTIADIKRYRINYMNDKLTKLDNAFDNLKSDVVDYISNDCKLEDKRQYDFSRWNITEAIDMINSIWTCDSAFFDHNEFTSSLQYLEERLDKPEEAALHYLVPVDFHF
Ga0247836_10077943F004475AGGAGGMTNWTEELTEKQKEEVWYFIVETVKEIREQIAVDIQATSQLWKTKGLNKSRRTQKAFDISAAIARGQNEI
Ga0247836_100779432F004132GAGGMSETMTQEQLSVPYNPNLLVTYKAIPETYAAPESPTFMTDKVTEIEWQLHRGRTNADVARERREDIEWLEQQIPEWYDPNYDKEEVLKALAEHFKLNPVKEMSVYGTVTFSGTISIPLDEIENFDLSSVSIEADLSSYDYEADLTVDDVSLEEN
Ga0247836_10077949F020851N/AMSEDLVDLAISMAEMDTGMVLPLEEREVMRQRILARIEEINL
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